Aliases for LINC01220 Gene

Subcategory (RNA class) for LINC01220 Gene

lncRNA

Number of RNA Genes sources:

3 / 14

Aliases for LINC01220 Gene

  • Long Intergenic Non-Protein Coding RNA 1220 2 3 5
  • LINC01220 2 168
  • HSALNG0102512 167
  • NONHSAG015492 92

External Ids for LINC01220 Gene

Previous GeneCards Identifiers for LINC01220 Gene

  • GC14P075764

Summaries for LINC01220 Gene

GeneCards Summary for LINC01220 Gene

LINC01220 (Long Intergenic Non-Protein Coding RNA 1220) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for LINC01220 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LINC01220 Gene

Genomics for LINC01220 Gene

GeneHancer (GH) Regulatory Elements for LINC01220 Gene

Promoters and enhancers for LINC01220 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH14J075293 Promoter/Enhancer 2.3 FANTOM5 Ensembl ENCODE CraniofacialAtlas dbSUPER 10.6 +2.0 2033 6.9 EP300 ZNF217 CTCF SIN3A MYC POLR2G PHF8 TEAD4 ZBTB5 ZIC2 JDP2 NEK9 FCF1 TMED10 LINC01220 BATF ABCD4 MLH3 FOS DPPA5P4
GH14J075273 Promoter/Enhancer 2.7 EPDnew FANTOM5 Ensembl ENCODE CraniofacialAtlas dbSUPER 6.4 -15.3 -15282 11.8 EP300 FOXK2 ZNF217 CTCF TCF12 SIN3A NRF1 POLR2G SP1 NCOR1 FOS lnc-TMED10-5 ENSG00000258559 GPATCH2L ABCD4 NEK9 ENSG00000259005 MLH3 FCF1 TTLL5
GH14J075309 Enhancer 1.4 FANTOM5 Ensembl ENCODE CraniofacialAtlas dbSUPER 5.1 +18.7 18714 6.6 CTCF ZIC2 SAP30 RFX1 TCF12 SIN3A ZNF335 RCOR1 ZNF398 MAZ JDP2 TMED10 NEK9 ZC2HC1C MLH3 LINC01220 HSALNG0102515
GH14J075287 Enhancer 0.7 ENCODE dbSUPER 10.1 -6.3 -6289 0.7 USF1 ZBTB17 ZNF335 ATF3 TAF1 ZNF449 USF2 SP7 SREBF1 CEBPB LINC01220 FOS DPPA5P4 lnc-TMED10-2
GH14J075307 Enhancer 1 Ensembl ENCODE 5.8 +13.6 13597 2 CTCF MYC REST ZBTB25 EP300 RAD21 TRIM22 TEAD1 SMC3 MXI1 JDP2 TMED10 NEK9 ZC2HC1C MLH3 LINC01220 HSALNG0102515
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LINC01220 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LINC01220 Gene

Genomic Locations for LINC01220 Gene
chr14:75,294,404-75,299,598
(GRCh38/hg38)
Size:
5,195 bases
Orientation:
Plus strand
chr14:75,761,107-75,763,341
(GRCh37/hg19)
Size:
2,235 bases
Orientation:
Plus strand

Genomic View for LINC01220 Gene

Genes around LINC01220 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LINC01220 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC01220 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINC01220 Gene

Proteins for LINC01220 Gene

Post-translational modifications for LINC01220 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC01220 Gene

Domains & Families for LINC01220 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LINC01220 Gene

Function for LINC01220 Gene

Phenotypes From GWAS Catalog for LINC01220 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC01220 Gene

Localization for LINC01220 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC01220 Gene

Pathways & Interactions for LINC01220 Gene

PathCards logo

SuperPathways for LINC01220 Gene

No Data Available
;

Gene Ontology (GO) - Biological Process for LINC01220 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for LINC01220 Gene

Drugs & Compounds for LINC01220 Gene

No Compound Related Data Available

Transcripts for LINC01220 Gene

mRNA/cDNA for LINC01220 Gene

17 RNACentral transcripts :
1 REFSEQ mRNAs :
2 NCBI additional mRNA sequence :
4 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
4 NONCODE transcripts :
7 LncBook transcripts :
11 LNCipedia transcripts :

Alternative Splicing Database (ASD) splice patterns (SP) for LINC01220 Gene

No ASD Table

Relevant External Links for LINC01220 Gene

GeneLoc Exon Structure for
LINC01220

Expression for LINC01220 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for LINC01220 Gene

mRNA differential expression in normal tissues according to GTEx for LINC01220 Gene

This gene is overexpressed in Whole Blood (x6.4).

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for LINC01220

genes like me logo Genes that share expression patterns with LINC01220: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC01220 Gene

Orthologs for LINC01220 Gene

Evolution for LINC01220 Gene

ENSEMBL:
Gene Tree for LINC01220 (if available)
TreeFam:
Gene Tree for LINC01220 (if available)

No data available for Orthologs for LINC01220 Gene

Paralogs for LINC01220 Gene

No data available for Paralogs for LINC01220 Gene

Variants for LINC01220 Gene

Additional dbSNP identifiers (rs#s) for LINC01220 Gene

Structural Variations from Database of Genomic Variants (DGV) for LINC01220 Gene

Variant ID Type Subtype PubMed ID
nsv832833 CNV gain 17160897

Additional Variant Information for LINC01220 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC01220

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP and Variation tolerance for LINC01220 Gene

Disorders for LINC01220 Gene

Additional Disease Information for LINC01220

No disorders were found for LINC01220 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LINC01220 Gene

Publications for LINC01220 Gene

  1. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K … Sugano S (Genome research 2006) 3 54
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3 54

Products for LINC01220 Gene

Sources for LINC01220 Gene