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Aliases for LINC01219 Gene

Subcategory (RNA class) for LINC01219 Gene

non-coding RNA

Quality Score for this RNA gene is

13

Aliases for LINC01219 Gene

  • Long Intergenic Non-Protein Coding RNA 1219 2 3 5

External Ids for LINC01219 Gene

Previous GeneCards Identifiers for LINC01219 Gene

  • GC00U935835

Summaries for LINC01219 Gene

GeneCards Summary for LINC01219 Gene

LINC01219 (Long Intergenic Non-Protein Coding RNA 1219) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for LINC01219 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LINC01219 Gene

Genomics for LINC01219 Gene

GeneHancer (GH) Regulatory Elements for LINC01219 Gene

Promoters and enhancers for LINC01219 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH11J001985 Promoter/Enhancer 2.5 EPDnew FANTOM5 Ensembl ENCODE dbSUPER 600.7 +1.6 1553 14.8 ZNF652 ELF3 MNT CBFA2T2 POLR2A ZNF121 CEBPG RERE GTF2F1 CTCF LINC01219 H19 MRPL23-AS1 IGF2 TSPAN32 SYT8 MIR675 ENSG00000275266 ENSG00000274866 GC11P001999
GH11J001837 Promoter/Enhancer 2 FANTOM5 Ensembl ENCODE dbSUPER 4.5 -149.3 -149257 8.7 CC2D1A CTCF ELF3 MNT CBFA2T2 MLLT1 RERE GTF2F1 AHR CDC5L TNNI2 IFITM10 LSP1 LINC01219 C11orf21 GC11P001831 SYT8
GH11J002008 Enhancer 1.4 VISTA Ensembl ENCODE dbSUPER 5.3 +21.3 21345 7.3 RERE PPARG SP5 ZNF547 HMG20B GATAD2A RXRB KMT2B SOX13 TCF7 GC11P002011 MRPL23-AS1 LINC01219 GC11M002042 MRPL23
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LINC01219 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LINC01219 Gene

Genomic Locations for LINC01219 Gene
chr11:1,991,096-1,993,670
(GRCh38/hg38)
Size:
2,575 bases
Orientation:
Plus strand

Genomic View for LINC01219 Gene

Genes around LINC01219 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LINC01219 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC01219 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINC01219 Gene

Proteins for LINC01219 Gene

Post-translational modifications for LINC01219 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC01219 Gene

Domains & Families for LINC01219 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LINC01219 Gene

Function for LINC01219 Gene

Phenotypes From GWAS Catalog for LINC01219 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC01219 Gene

Localization for LINC01219 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC01219 Gene

Pathways & Interactions for LINC01219 Gene

PathCards logo

SuperPathways for LINC01219 Gene

No Data Available

Interacting Proteins for LINC01219 Gene

Gene Ontology (GO) - Biological Process for LINC01219 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LINC01219 Gene

Drugs & Compounds for LINC01219 Gene

No Compound Related Data Available

Transcripts for LINC01219 Gene

mRNA/cDNA for LINC01219 Gene

(1) Additional mRNA sequences :
(1) Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
(2) RNA Central transcripts :

Alternative Splicing Database (ASD) splice patterns (SP) for LINC01219 Gene

No ASD Table

Relevant External Links for LINC01219 Gene

GeneLoc Exon Structure for
LINC01219
ECgene alternative splicing isoforms for
LINC01219

Expression for LINC01219 Gene

NURSA nuclear receptor signaling pathways regulating expression of LINC01219 Gene:

LINC01219
No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC01219 Gene

Orthologs for LINC01219 Gene

Evolution for LINC01219 Gene

ENSEMBL:
Gene Tree for LINC01219 (if available)
TreeFam:
Gene Tree for LINC01219 (if available)

No data available for Orthologs for LINC01219 Gene

Paralogs for LINC01219 Gene

No data available for Paralogs for LINC01219 Gene

Variants for LINC01219 Gene

Sequence variations from dbSNP and Humsavar for LINC01219 Gene

SNP ID Clin Chr 11 pos Variation AA Info Type
rs1000877876 -- 1,992,011(+) G/T non_coding_transcript_variant
rs1002821160 -- 1,993,929(+) C/T downstream_transcript_variant
rs1003073257 -- 1,989,409(+) G/A upstream_transcript_variant
rs1003451677 -- 1,989,160(+) A/T upstream_transcript_variant
rs1004948110 -- 1,993,605(+) C/T downstream_transcript_variant

Additional Variant Information for LINC01219 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC01219

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for LINC01219 Gene

Disorders for LINC01219 Gene

Additional Disease Information for LINC01219

No disorders were found for LINC01219 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LINC01219 Gene

Publications for LINC01219 Gene

No publications were found for LINC01219 Gene.

Products for LINC01219 Gene

Sources for LINC01219 Gene

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