Aliases for LINC01214 Gene

Subcategory (RNA class) for LINC01214 Gene

lncRNA

Number of RNA Genes sources:

3 / 14

Aliases for LINC01214 Gene

  • Long Intergenic Non-Protein Coding RNA 1214 2 3 5
  • LINC01214 2 168
  • NONHSAG036378 92
  • HSALNG0029775 167

External Ids for LINC01214 Gene

Previous GeneCards Identifiers for LINC01214 Gene

  • GC03M149985
  • GC03M150265

Summaries for LINC01214 Gene

GeneCards Summary for LINC01214 Gene

LINC01214 (Long Intergenic Non-Protein Coding RNA 1214) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for LINC01214 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LINC01214 Gene

Genomics for LINC01214 Gene

GeneHancer (GH) Regulatory Elements for LINC01214 Gene

Promoters and enhancers for LINC01214 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH03J150340 Enhancer 0.3 Ensembl dbSUPER 500.7 +0.9 889 0.2 LINC01214 ENSG00000286501 lnc-TSC22D2-5 lnc-TSC22D2-6
GH03J150319 Enhancer 1 Ensembl ENCODE 0.4 +21.3 21289 3.8 ZNF217 TCF12 JUND FOS CUX1 EP300 GATAD2B CTBP1 RBM25 SMARCC1 PFN2 ENSG00000242791 ANKUB1 EIF2A LINC01214 lnc-TSC22D2-5 lnc-TSC22D2-6
GH03J150317 Enhancer 0.9 Ensembl ENCODE 0.4 +23.7 23678 0.6 ZNF217 TCF12 FOXA1 SKI CTBP1 FOXA2 ESRRA MYC POLR2A FOSL2 LINC01214 lnc-TSC22D2-5 lnc-TSC22D2-6
GH03J150313 Enhancer 0.9 Ensembl ENCODE 0.3 +26.2 26194 2.4 ZNF217 KLF4 MYC GATAD2B CTBP1 SIN3A NFIC MBD2 NCOR1 ESR1 LINC01214 lnc-TSC22D2-5 lnc-TSC22D2-6
GH03J150307 Enhancer 1 Ensembl ENCODE 0.3 +32.8 32792 3.6 TEAD4 EP300 GATAD2B CTBP1 ESRRA DEK MYC ZNF316 MAFF SMARCC1 lnc-TSC22D2-5 LINC01214 lnc-TSC22D2-6
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LINC01214 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LINC01214 Gene

Genomic Locations for LINC01214 Gene
chr3:150,243,474-150,341,390
(GRCh38/hg38)
Size:
97,917 bases
Orientation:
Minus strand
chr3:149,983,199-150,005,160
(GRCh37/hg19)
Size:
21,962 bases
Orientation:
Minus strand

Genomic View for LINC01214 Gene

Genes around LINC01214 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LINC01214 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC01214 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINC01214 Gene

Proteins for LINC01214 Gene

Post-translational modifications for LINC01214 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC01214 Gene

Domains & Families for LINC01214 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LINC01214 Gene

Function for LINC01214 Gene

Phenotypes From GWAS Catalog for LINC01214 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC01214 Gene

Localization for LINC01214 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC01214 Gene

Pathways & Interactions for LINC01214 Gene

PathCards logo

SuperPathways for LINC01214 Gene

No Data Available
;

Gene Ontology (GO) - Biological Process for LINC01214 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for LINC01214 Gene

Drugs & Compounds for LINC01214 Gene

No Compound Related Data Available

Transcripts for LINC01214 Gene

mRNA/cDNA for LINC01214 Gene

12 RNACentral transcripts :
2 REFSEQ mRNAs :
2 NCBI additional mRNA sequence :
2 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
8 NONCODE transcripts :
6 LncBook transcripts :
4 LNCipedia transcripts :

Alternative Splicing Database (ASD) splice patterns (SP) for LINC01214 Gene

No ASD Table

Relevant External Links for LINC01214 Gene

GeneLoc Exon Structure for
LINC01214

Expression for LINC01214 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for LINC01214 Gene

mRNA differential expression in normal tissues according to GTEx for LINC01214 Gene

This gene is overexpressed in Testis (x21.0), Vagina (x7.6), Cervix - Ectocervix (x5.7), Skin - Sun Exposed (Lower leg) (x5.3), and Skin - Not Sun Exposed (Suprapubic) (x4.8).

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for LINC01214

genes like me logo Genes that share expression patterns with LINC01214: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC01214 Gene

Orthologs for LINC01214 Gene

Evolution for LINC01214 Gene

ENSEMBL:
Gene Tree for LINC01214 (if available)
TreeFam:
Gene Tree for LINC01214 (if available)

No data available for Orthologs for LINC01214 Gene

Paralogs for LINC01214 Gene

No data available for Paralogs for LINC01214 Gene

Variants for LINC01214 Gene

Additional dbSNP identifiers (rs#s) for LINC01214 Gene

Structural Variations from Database of Genomic Variants (DGV) for LINC01214 Gene

Variant ID Type Subtype PubMed ID
nsv472155 CNV novel sequence insertion 20440878
nsv829755 CNV loss 17160897

Additional Variant Information for LINC01214 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC01214

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP and Variation tolerance for LINC01214 Gene

Disorders for LINC01214 Gene

Additional Disease Information for LINC01214

No disorders were found for LINC01214 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LINC01214 Gene

Publications for LINC01214 Gene

  1. Novel loci for adiponectin levels and their influence on type 2 diabetes and metabolic traits: a multi-ethnic meta-analysis of 45,891 individuals. (PMID: 22479202) Dastani Z … Kathiresan S (PLoS genetics 2012) 3 54

Products for LINC01214 Gene

Sources for LINC01214 Gene