Aliases for LINC01213 Gene

Subcategory (RNA class) for LINC01213 Gene

lncRNA

Number of RNA Genes sources:

3 / 14

Aliases for LINC01213 Gene

  • Long Intergenic Non-Protein Coding RNA 1213 2 3 5
  • LINC01213 2 168
  • HSALNG0029767 167
  • NONHSAG036376 92

External Ids for LINC01213 Gene

Previous GeneCards Identifiers for LINC01213 Gene

  • GC03P149957

Summaries for LINC01213 Gene

GeneCards Summary for LINC01213 Gene

LINC01213 (Long Intergenic Non-Protein Coding RNA 1213) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for LINC01213 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LINC01213 Gene

Genomics for LINC01213 Gene

GeneHancer (GH) Regulatory Elements for LINC01213 Gene

Promoters and enhancers for LINC01213 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH03J150234 Promoter/Enhancer 1.3 Ensembl ENCODE CraniofacialAtlas 500.7 -1.4 -1419 4.6 ZNF217 CTCF JUND REST RFX1 CUX1 RAD21 TRIM22 GATAD2B SMC3 LINC01213 PFN2 ENSG00000242791 ANKUB1 ENSG00000241048
GH03J150243 Enhancer 0.2 Ensembl 500.7 +1.8 1782 0.2 ENSG00000278234 LINC01213 lnc-TSC22D2-8 PFN2 ENSG00000242791 ANKUB1
GH03J150242 Enhancer 0.8 Ensembl ENCODE CraniofacialAtlas 0.7 +4.0 3982 1 PRDM6 ZNF2 TRIM28 ZSCAN30 ENSG00000278234 PFN2 ENSG00000242791 ANKUB1 LINC01213 lnc-TSC22D2-7 lnc-TSC22D2-8
GH03J150227 Enhancer 0.9 Ensembl ENCODE 0.4 -10.5 -10453 0.7 ZNF217 CTCF REST RAD21 TRIM22 SMC3 FOXA2 SPI1 ETS1 ELF1 PFN2 ENSG00000242791 ANKUB1 TSC22D2 ENSG00000241048 LINC01213
GH03J150241 Enhancer 0.5 Ensembl 0.7 +2.5 2482 0.8 USF1 CTCF RAD21 RAD51 CTCFL NCOA3 RXRA FOXA2 ENSG00000278234 lnc-TSC22D2-8 PFN2 ENSG00000242791 ANKUB1 LINC01213
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LINC01213 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LINC01213 Gene

Genomic Locations for LINC01213 Gene
chr3:150,238,519-150,244,232
(GRCh38/hg38)
Size:
5,714 bases
Orientation:
Plus strand
chr3:149,956,306-149,957,996
(GRCh37/hg19)
Size:
1,691 bases
Orientation:
Plus strand

Genomic View for LINC01213 Gene

Genes around LINC01213 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LINC01213 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC01213 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINC01213 Gene

Proteins for LINC01213 Gene

Post-translational modifications for LINC01213 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC01213 Gene

Domains & Families for LINC01213 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LINC01213 Gene

Function for LINC01213 Gene

Phenotypes From GWAS Catalog for LINC01213 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC01213 Gene

Localization for LINC01213 Gene

Subcellular locations from

COMPARTMENTS
Extracellular space Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi Apparatus Nucleus Mitochondrion 0 1 2 3 4 5 Confidence
COMPARTMENTS Subcellular localization image for LINC01213 gene
Compartment Confidence
nucleus 1

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC01213 Gene

Pathways & Interactions for LINC01213 Gene

PathCards logo

SuperPathways for LINC01213 Gene

No Data Available
;

Gene Ontology (GO) - Biological Process for LINC01213 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for LINC01213 Gene

Drugs & Compounds for LINC01213 Gene

No Compound Related Data Available

Transcripts for LINC01213 Gene

mRNA/cDNA for LINC01213 Gene

11 RNACentral transcripts :
2 REFSEQ mRNAs :
2 NCBI additional mRNA sequence :
5 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
3 NONCODE transcripts :
3 LncBook transcripts :
7 LNCipedia transcripts :

Alternative Splicing Database (ASD) splice patterns (SP) for LINC01213 Gene

No ASD Table

Relevant External Links for LINC01213 Gene

GeneLoc Exon Structure for
LINC01213

Expression for LINC01213 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for LINC01213 Gene

mRNA differential expression in normal tissues according to GTEx for LINC01213 Gene

This gene is overexpressed in Prostate (x11.4) and Bladder (x11.0).

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for LINC01213

genes like me logo Genes that share expression patterns with LINC01213: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC01213 Gene

Orthologs for LINC01213 Gene

Evolution for LINC01213 Gene

ENSEMBL:
Gene Tree for LINC01213 (if available)
TreeFam:
Gene Tree for LINC01213 (if available)

No data available for Orthologs for LINC01213 Gene

Paralogs for LINC01213 Gene

No data available for Paralogs for LINC01213 Gene

Variants for LINC01213 Gene

Additional dbSNP identifiers (rs#s) for LINC01213 Gene

Additional Variant Information for LINC01213 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC01213

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for LINC01213 Gene

Disorders for LINC01213 Gene

Additional Disease Information for LINC01213

No disorders were found for LINC01213 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LINC01213 Gene

Publications for LINC01213 Gene

  1. Time resolved gene expression analysis during tamoxifen adaption of MCF-7 cells identifies long non-coding RNAs with prognostic impact. (PMID: 30760083) Porsch M … Nass N (RNA biology 2019) 3 54

Products for LINC01213 Gene

Sources for LINC01213 Gene