Aliases for LINC01206 Gene

Subcategory (RNA class) for LINC01206 Gene

lncRNA

Number of RNA Genes sources:

3 / 17

Aliases for LINC01206 Gene

  • Long Intergenic Non-Protein Coding RNA 1206 2 3 5
  • LINC01206 2 5 165
  • NONHSAG036792.2 91
  • HSALNG0031062 164

External Ids for LINC01206 Gene

Previous GeneCards Identifiers for LINC01206 Gene

  • GC03P181673

Summaries for LINC01206 Gene

GeneCards Summary for LINC01206 Gene

LINC01206 (Long Intergenic Non-Protein Coding RNA 1206) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for LINC01206 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LINC01206 Gene

Genomics for LINC01206 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for LINC01206 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH03J181952 Promoter 0.3 EPDnew 600.7 +0.0 38 0.1 LINC01206 RN7SKP265 lnc-SOX2-5 lnc-SOX2-6 SOX2 ATP11B
GH03J181987 Enhancer 0.3 Ensembl 11.9 +36.0 35957 0.6 RFX5 LINC01206 piR-41306-196 RN7SKP265 lnc-SOX2-5 SOX2 ATP11B
GH03J182005 Enhancer 0.4 Ensembl 8 +54.1 54058 1.2 EGR1 CBFA2T2 CBFA2T3 piR-33420 piR-37038 piR-37092 piR-39055 piR-37587 piR-31471 piR-31653 piR-39573 piR-39601 piR-40028
GH03J181973 Enhancer 0.4 ENCODE 4.7 +22.0 22025 1 PRDM1 FOS JUND LINC01206 RN7SKP265 lnc-SOX2-5 piR-41306-196 lnc-SOX2-6 SOX2 ATP11B
GH03J182046 Enhancer 0.3 Ensembl 5 +94.2 94158 0.2 NRF1 piR-31937-146 piR-42876 piR-48621-002 LINC01206 HSALNG0031070 lnc-DCUN1D1-13 SOX2 ATP11B
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LINC01206 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for LINC01206 Gene

Genomic Locations for LINC01206 Gene
chr3:181,952,343-182,035,644
(GRCh38/hg38)
Size:
83,302 bases
Orientation:
Plus strand
chr3:181,670,131-181,728,466
(GRCh37/hg19)
Size:
58,336 bases
Orientation:
Plus strand

Genomic View for LINC01206 Gene

Genes around LINC01206 on UCSC Golden Path with GeneCards custom track
LINC01206 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Cytogenetic band:
LINC01206 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC01206 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINC01206 Gene

Proteins for LINC01206 Gene

Post-translational modifications for LINC01206 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC01206 Gene

Domains & Families for LINC01206 Gene

Gene Families for LINC01206 Gene

genes like me logo Genes that share domains with LINC01206: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LINC01206 Gene

Function for LINC01206 Gene

Phenotypes From GWAS Catalog for LINC01206 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC01206 Gene

Localization for LINC01206 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC01206 Gene

Pathways & Interactions for LINC01206 Gene

PathCards logo

SuperPathways for LINC01206 Gene

No Data Available

Gene Ontology (GO) - Biological Process for LINC01206 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for LINC01206 Gene

Drugs & Compounds for LINC01206 Gene

No Compound Related Data Available

Transcripts for LINC01206 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for LINC01206 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS00003DC378_9606 lncRNA 965 4

Ensembl: ENST00000608336 (view in UCSC) ,

LncBook: HSALNT0065150,

LNCipedia: LINC01206:27,

NONCODE: NONHSAT195022.1,

URS0000811CC2_9606 lncRNA 917 4

Ensembl: ENST00000629003 (view in UCSC) ,

LncBook: HSALNT0065140,

LNCipedia: LINC01206:22,

NONCODE: NONHSAT195017.1,

URS0000811A4B_9606 lncRNA 892 4

Ensembl: ENST00000625878 (view in UCSC) ,

LncBook: HSALNT0065146,

LNCipedia: LINC01206:25,

NONCODE: NONHSAT195020.1,

URS0000811C5D_9606 lncRNA 836 4

Ensembl: ENST00000625373 (view in UCSC) ,

LncBook: HSALNT0065142,

LNCipedia: LINC01206:23,

NONCODE: NONHSAT195018.1,

URS0000811EC5_9606 lncRNA 820 4

Ensembl: ENST00000625703 (view in UCSC) ,

LncBook: HSALNT0065165,

LNCipedia: LINC01206:36,

NONCODE: NONHSAT195029.1,

LINC01206 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for LINC01206 Gene

3 NCBI additional mRNA sequence :

Alternative Splicing Database (ASD) splice patterns (SP) for LINC01206 Gene

No ASD Table

Relevant External Links for LINC01206 Gene

GeneLoc Exon Structure for
LINC01206

Expression for LINC01206 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for LINC01206 Gene

mRNA differential expression in normal tissues according to GTEx for LINC01206 Gene

This gene is overexpressed in Testis (x49.0).

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for LINC01206

genes like me logo Genes that share expression patterns with LINC01206: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC01206 Gene

Orthologs for LINC01206 Gene

Evolution for LINC01206 Gene

ENSEMBL:
Gene Tree for LINC01206 (if available)
TreeFam:
Gene Tree for LINC01206 (if available)

No data available for Orthologs for LINC01206 Gene

Paralogs for LINC01206 Gene

No data available for Paralogs for LINC01206 Gene

Variants for LINC01206 Gene

Additional dbSNP identifiers (rs#s) for LINC01206 Gene

Structural Variations from Database of Genomic Variants (DGV) for LINC01206 Gene

Variant ID Type Subtype PubMed ID
nsv1005353 CNV gain 25217958

Additional Variant Information for LINC01206 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC01206

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP and Variation tolerance for LINC01206 Gene

Disorders for LINC01206 Gene

No disorders were found for LINC01206 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LINC01206 Gene

Publications for LINC01206 Gene

  1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3

Products for LINC01206 Gene

Sources for LINC01206 Gene