Aliases for LINC01203 Gene

Data sources for LINC01203 Gene:

Subcategory (RNA class) for LINC01203 Gene

lncRNA

Aliases for LINC01203 Gene

External Ids for LINC01203 Gene

Previous GeneCards Identifiers for LINC01203 Gene

  • GC0XP013359
  • GC0XP013332

Summaries for LINC01203 Gene

GeneCards Summary for LINC01203 Gene

LINC01203 (Long Intergenic Non-Protein Coding RNA 1203) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for LINC01203 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LINC01203 Gene

Genomics for LINC01203 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for LINC01203 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH0XJ013375 Promoter/Enhancer 1.2 EPDnew ENCODE dbSUPER 250.3 +45.4 45430 2.9 EBF1 FOXA2 PRDM6 BATF IKZF1 ATF2 ATF4 MAX PRDM4 POLR2A LINC01203 GPX1P1 LOC105373137 ATXN3L EGFL6
GH0XJ013395 Enhancer 1.4 FANTOM5 Ensembl ENCODE dbSUPER 0.2 +66.3 66265 4.4 ZNF217 CEBPB MBD2 MAX EP300 RXRA PRDM1 RAD21 CTBP1 RARA piR-40110-704 piR-47675-124 LOC105373137 lnc-ATXN3L-3 LINC01203 ATXN3L EGFL6
GH0XJ013372 Enhancer 0.8 Ensembl ENCODE dbSUPER 0.3 +41.7 41650 2.7 NFE2 MAFG ATF2 NFE2L2 FOS EMSY JUND LOC105373137 GPX1P1 LINC01203 ATXN3L EGFL6
GH0XJ013344 Enhancer 0.5 Ensembl 0.4 +13.7 13710 2.4 IKZF1 NR2F1 ZNF687 MTA2 IKZF2 RELB GATAD2B LINC02154 RF00017-8162 piR-32214-703 LINC01203 ATXN3L EGFL6
GH0XJ013386 Enhancer 0.9 Ensembl ENCODE dbSUPER 0.2 +56.0 56009 2.2 BCL6 ZNF316 NFE2 MAFK MAFG SPI1 MZF1 ZNF740 NFIC EMSY piR-47675-124 LOC105373137 piR-40110-704 lnc-ATXN3L-3 LINC01203 ATXN3L EGFL6
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LINC01203 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for LINC01203 Gene

Latest Assembly
chrX:13,331,691-13,403,035
(GRCh38/hg38)
Size:
71,345 bases
Orientation:
Plus strand

Previous Assembly
chrX:13,353,360-13,359,944
(GRCh37/hg19 by Entrez Gene)
Size:
6,585 bases
Orientation:
Plus strand

chrX:13,353,360-13,391,753
(GRCh37/hg19 by Ensembl)
Size:
38,394 bases
Orientation:
Plus strand

Genomic View for LINC01203 Gene

Genes around LINC01203 on UCSC Golden Path with GeneCards custom track
LINC01203 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Cytogenetic band:
LINC01203 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC01203 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINC01203 Gene

Proteins for LINC01203 Gene

Post-translational modifications for LINC01203 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC01203 Gene

Domains & Families for LINC01203 Gene

Gene Families for LINC01203 Gene

genes like me logo Genes that share domains with LINC01203: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LINC01203 Gene

Function for LINC01203 Gene

Phenotypes From GWAS Catalog for LINC01203 Gene

Phenotypes for LINC01203 Gene

genes like me logo Genes that share phenotypes with LINC01203: view

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC01203 Gene

Localization for LINC01203 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC01203 Gene

Pathways & Interactions for LINC01203 Gene

PathCards logo

SuperPathways for LINC01203 Gene

No Data Available

Gene Ontology (GO) - Biological Process for LINC01203 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for LINC01203 Gene

Drugs & Compounds for LINC01203 Gene

No Compound Related Data Available

Transcripts for LINC01203 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for LINC01203 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS00002CB32E_9606 lncRNA 587 5

RefSeq: NR_045260,

Ensembl: ENST00000419566 (view in UCSC) ,

LncBook: HSALNT0280346,

LNCipedia: LINC01203:4,

NONCODE: NONHSAT136302.2,

URS000000CCE3_9606 lncRNA 453 4

Ensembl: ENST00000446964 (view in UCSC) ,

LncBook: HSALNT0280358,

LNCipedia: lnc-EGFL6-8:1,

NONCODE: NONHSAT136304.2,

URS0000103502_9606 lncRNA 425 4

Ensembl: ENST00000420403 (view in UCSC) ,

LncBook: HSALNT0280369,

LNCipedia: lnc-EGFL6-8:2,

NONCODE: NONHSAT136308.2,

URS0000EF4B01_9606 lncRNA 2775 1

Ensembl: ENST00000669963 (view in UCSC) ,

URS0000EF3C81_9606 lncRNA 2218 1

Ensembl: ENST00000655502 (view in UCSC) ,

LINC01203 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for LINC01203 Gene

2 NCBI additional mRNA sequence :

Alternative Splicing Database (ASD) splice patterns (SP) for LINC01203 Gene

No ASD Table

Relevant External Links for LINC01203 Gene

GeneLoc Exon Structure for
LINC01203

Expression for LINC01203 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for LINC01203 Gene

mRNA differential expression in normal tissues according to GTEx for LINC01203 Gene

This gene is overexpressed in Testis (x39.0).

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for LINC01203

genes like me logo Genes that share expression patterns with LINC01203: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC01203 Gene

Orthologs for LINC01203 Gene

Evolution for LINC01203 Gene

ENSEMBL:
Gene Tree for LINC01203 (if available)
TreeFam:
Gene Tree for LINC01203 (if available)

No data available for Orthologs for LINC01203 Gene

Paralogs for LINC01203 Gene

No data available for Paralogs for LINC01203 Gene

Variants for LINC01203 Gene

dbSNP identifiers (rs#s) for variants without ClinVar clinical significance for LINC01203 Gene

All consequence types are included: molecular consequences (e.g. missense, synonymous), and location-based (e.g. intron, upstream).

Structural Variations from Database of Genomic Variants (DGV) for LINC01203 Gene

Variant ID Type Subtype PubMed ID
esv3576773 CNV gain 25503493
nsv470341 CNV gain 18288195

Additional Variant Information for LINC01203 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC01203

SNP Genotyping and Copy Number Assays for research

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP and Variation tolerance for LINC01203 Gene

Disorders for LINC01203 Gene

Additional Disease Information for LINC01203

No disorders were found for LINC01203 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LINC01203 Gene

Publications for LINC01203 Gene

No publications were found for LINC01203 Gene.

No data available for Mastermind for LINC01203 Gene

Products for LINC01203 Gene

Sources for LINC01203 Gene