Aliases for LINC01203 Gene

Subcategory (RNA class) for LINC01203 Gene

lncRNA

Number of RNA Genes sources:

3 / 17

Aliases for LINC01203 Gene

  • Long Intergenic Non-Protein Coding RNA 1203 2 3 5
  • LINC01203 2 5 165
  • NONHSAG054044.2 91
  • NONHSAG054045.2 91
  • NONHSAG054046.2 91
  • HSALNG0136705 164
  • Lnc-EGFL6-8 165
  • Lnc-EGFL6-4 165

External Ids for LINC01203 Gene

Previous GeneCards Identifiers for LINC01203 Gene

  • GC0XP013359

Summaries for LINC01203 Gene

GeneCards Summary for LINC01203 Gene

LINC01203 (Long Intergenic Non-Protein Coding RNA 1203) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for LINC01203 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LINC01203 Gene

Genomics for LINC01203 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for LINC01203 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH0XJ013375 Promoter/Enhancer 1.2 EPDnew ENCODE dbSUPER 600.3 +44.6 44639 2.9 FOXA1 IKZF2 EED RELB JUND CEBPB RUNX3 FOXA2 OSR2 IKZF1 LINC01203 GPX1P1 LOC105373137 ATXN3L EGFL6
GH0XJ013395 Enhancer 1.4 FANTOM5 Ensembl ENCODE dbSUPER 0.2 +65.5 65497 4.4 JUND FOXA1 REST SOX6 ATF7 CEBPB SP1 SMARCC1 SMARCC2 ESR1 piR-40110-704 piR-47675-124 lnc-ATXN3L-3 LOC105373137 LINC01203 ATXN3L EGFL6
GH0XJ013372 Enhancer 0.8 Ensembl ENCODE dbSUPER 0.3 +40.5 40518 4 JUND NFE2 FOS MAFG ATF2 NFE2L2 EMSY LINC02154 LOC105373137 GPX1P1 LINC01203 ATXN3L EGFL6
GH0XJ013386 Enhancer 1 Ensembl ENCODE dbSUPER 0.2 +55.1 55118 2.8 ZNF740 TCF7L2 NFE2 ZNF316 ZNF592 MAFG GTF2A2 NFIC RELA MAFK piR-47675-124 LOC105373137 piR-40110-704 lnc-ATXN3L-3 LINC01203 ATXN3L EGFL6
GH0XJ013344 Enhancer 0.5 Ensembl 0.4 +12.9 12919 2.4 RELA RELB GATAD2B IKZF1 NR2F1 MTA2 ZNF687 IKZF2 LINC02154 RF00017-8164 piR-32214-703 LINC01203 ATXN3L EGFL6
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LINC01203 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for LINC01203 Gene

Genomic Locations for LINC01203 Gene
chrX:13,332,482-13,403,035
(GRCh38/hg38)
Size:
70,554 bases
Orientation:
Plus strand
chrX:13,353,360-13,391,753
(GRCh37/hg19)
Size:
38,394 bases
Orientation:
Plus strand

Genomic View for LINC01203 Gene

Genes around LINC01203 on UCSC Golden Path with GeneCards custom track
LINC01203 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Cytogenetic band:
LINC01203 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC01203 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINC01203 Gene

Proteins for LINC01203 Gene

Post-translational modifications for LINC01203 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC01203 Gene

Domains & Families for LINC01203 Gene

Gene Families for LINC01203 Gene

genes like me logo Genes that share domains with LINC01203: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LINC01203 Gene

Function for LINC01203 Gene

Phenotypes From GWAS Catalog for LINC01203 Gene

Phenotypes for LINC01203 Gene

genes like me logo Genes that share phenotypes with LINC01203: view

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC01203 Gene

Localization for LINC01203 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC01203 Gene

Pathways & Interactions for LINC01203 Gene

PathCards logo

SuperPathways for LINC01203 Gene

No Data Available

Gene Ontology (GO) - Biological Process for LINC01203 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for LINC01203 Gene

Drugs & Compounds for LINC01203 Gene

No Compound Related Data Available

Transcripts for LINC01203 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for LINC01203 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS00002CB32E_9606 lncRNA 580 6

HGNC: 49634,

RefSeq: NR_045260,

Ensembl: ENST00000419566 (view in UCSC) ,

LncBook: HSALNT0280346,

LNCipedia: LINC01203:4,

NONCODE: NONHSAT136302.2,

URS000000CCE3_9606 lncRNA 453 4

Ensembl: ENST00000446964 (view in UCSC) ,

LncBook: HSALNT0280358,

LNCipedia: lnc-EGFL6-8:1,

NONCODE: NONHSAT136304.2,

URS0000103502_9606 lncRNA 425 4

Ensembl: ENST00000420403 (view in UCSC) ,

LncBook: HSALNT0280369,

LNCipedia: lnc-EGFL6-8:2,

NONCODE: NONHSAT136308.2,

URS0000EF4B01_9606 lncRNA 2775 1

Ensembl: ENST00000669963 (view in UCSC) ,

URS0000EF3C81_9606 lncRNA 2218 1

Ensembl: ENST00000655502 (view in UCSC) ,

LINC01203 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for LINC01203 Gene

2 NCBI additional mRNA sequence :

Alternative Splicing Database (ASD) splice patterns (SP) for LINC01203 Gene

No ASD Table

Relevant External Links for LINC01203 Gene

GeneLoc Exon Structure for
LINC01203

Expression for LINC01203 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for LINC01203 Gene

mRNA differential expression in normal tissues according to GTEx for LINC01203 Gene

This gene is overexpressed in Testis (x39.0).

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for LINC01203

genes like me logo Genes that share expression patterns with LINC01203: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC01203 Gene

Orthologs for LINC01203 Gene

Evolution for LINC01203 Gene

ENSEMBL:
Gene Tree for LINC01203 (if available)
TreeFam:
Gene Tree for LINC01203 (if available)

No data available for Orthologs for LINC01203 Gene

Paralogs for LINC01203 Gene

No data available for Paralogs for LINC01203 Gene

Variants for LINC01203 Gene

Additional dbSNP identifiers (rs#s) for LINC01203 Gene

Structural Variations from Database of Genomic Variants (DGV) for LINC01203 Gene

Variant ID Type Subtype PubMed ID
esv3576773 CNV gain 25503493
nsv470341 CNV gain 18288195

Additional Variant Information for LINC01203 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC01203

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP and Variation tolerance for LINC01203 Gene

Disorders for LINC01203 Gene

No disorders were found for LINC01203 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LINC01203 Gene

Publications for LINC01203 Gene

No publications were found for LINC01203 Gene.

No data available for Mastermind for LINC01203 Gene

Products for LINC01203 Gene

Sources for LINC01203 Gene