Aliases for LINC01198 Gene

Subcategory (RNA class) for LINC01198 Gene

lncRNA

Number of RNA Genes sources:

3 / 14

Aliases for LINC01198 Gene

  • Long Intergenic Non-Protein Coding RNA 1198 2 3 5
  • LINC01198 2 168
  • NONHSAG013445 92
  • HSALNG0096884 167

External Ids for LINC01198 Gene

Previous GeneCards Identifiers for LINC01198 Gene

  • GC13U901064

Summaries for LINC01198 Gene

GeneCards Summary for LINC01198 Gene

LINC01198 (Long Intergenic Non-Protein Coding RNA 1198) is an RNA Gene, and is affiliated with the lncRNA class. Diseases associated with LINC01198 include Malignant Glioma.

Additional gene information for LINC01198 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LINC01198 Gene

Genomics for LINC01198 Gene

GeneHancer (GH) Regulatory Elements for LINC01198 Gene

Promoters and enhancers for LINC01198 Gene
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LINC01198 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LINC01198 Gene

Genomic Locations for LINC01198 Gene
chr13:46,455,131-46,515,958
(GRCh38/hg38)
Size:
60,828 bases
Orientation:
Minus strand

Genomic View for LINC01198 Gene

Genes around LINC01198 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LINC01198 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC01198 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINC01198 Gene

Proteins for LINC01198 Gene

Post-translational modifications for LINC01198 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC01198 Gene

Domains & Families for LINC01198 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LINC01198 Gene

Function for LINC01198 Gene

Phenotypes From GWAS Catalog for LINC01198 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC01198 Gene

Localization for LINC01198 Gene

Subcellular locations from

COMPARTMENTS
Extracellular space Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi Apparatus Nucleus Mitochondrion 0 1 2 3 4 5 Confidence
COMPARTMENTS Subcellular localization image for LINC01198 gene
Compartment Confidence
endosome 1

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC01198 Gene

Pathways & Interactions for LINC01198 Gene

PathCards logo

SuperPathways for LINC01198 Gene

No Data Available
;

Gene Ontology (GO) - Biological Process for LINC01198 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for LINC01198 Gene

Drugs & Compounds for LINC01198 Gene

No Compound Related Data Available

Transcripts for LINC01198 Gene

mRNA/cDNA for LINC01198 Gene

70 RNACentral transcripts :
1 REFSEQ mRNAs :
4 NCBI additional mRNA sequence :
54 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
13 NONCODE transcripts :
11 LncBook transcripts :
16 LNCipedia transcripts :

Alternative Splicing Database (ASD) splice patterns (SP) for LINC01198 Gene

No ASD Table

Relevant External Links for LINC01198 Gene

GeneLoc Exon Structure for
LINC01198

Expression for LINC01198 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for LINC01198 Gene

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for LINC01198

genes like me logo Genes that share expression patterns with LINC01198: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC01198 Gene

Orthologs for LINC01198 Gene

Evolution for LINC01198 Gene

ENSEMBL:
Gene Tree for LINC01198 (if available)
TreeFam:
Gene Tree for LINC01198 (if available)

No data available for Orthologs for LINC01198 Gene

Paralogs for LINC01198 Gene

No data available for Paralogs for LINC01198 Gene

Variants for LINC01198 Gene

Additional dbSNP identifiers (rs#s) for LINC01198 Gene

Structural Variations from Database of Genomic Variants (DGV) for LINC01198 Gene

Variant ID Type Subtype PubMed ID
dgv223e201 CNV deletion 23290073
esv1089933 CNV deletion 17803354
esv1257075 CNV insertion 17803354
esv1512990 CNV insertion 17803354
esv1527313 CNV deletion 17803354
esv1555619 CNV deletion 17803354
esv2659526 CNV deletion 23128226
esv2662046 CNV deletion 23128226
esv2664817 CNV deletion 23128226
esv2676825 CNV deletion 23128226
esv2747359 CNV deletion 23290073
esv2747360 CNV deletion 23290073
esv2747361 CNV deletion 23290073
esv2747362 CNV deletion 23290073
esv2896012 CNV deletion 24192839
esv994644 CNV deletion 20482838
nsv1025 CNV deletion 18451855
nsv1045198 CNV gain 25217958
nsv1076397 CNV duplication 25765185
nsv1115663 CNV deletion 24896259
nsv1124884 CNV deletion 24896259
nsv1128679 CNV duplication 24896259
nsv1136169 CNV deletion 24896259
nsv1153411 CNV deletion 26484159
nsv435644 CNV deletion 17901297
nsv455876 CNV gain 19166990
nsv498810 CNV loss 21111241
nsv510584 CNV deletion 20534489
nsv561581 CNV gain 21841781
nsv974086 CNV duplication 23825009
nsv976112 CNV duplication 23825009

Additional Variant Information for LINC01198 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC01198

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP and Variation tolerance for LINC01198 Gene

Disorders for LINC01198 Gene

MalaCards: The human disease database

(1) MalaCards diseases for LINC01198 Gene - From: LncRNADisease and DISEASES

Disorder Aliases PubMed IDs
malignant glioma
  • glial cell tumor
- elite association - COSMIC cancer census association via MalaCards

Additional Disease Information for LINC01198

genes like me logo Genes that share disorders with LINC01198: view

No data available for UniProtKB/Swiss-Prot and Genatlas for LINC01198 Gene

Publications for LINC01198 Gene

  1. LncRNA profile study reveals four-lncRNA signature associated with the prognosis of patients with anaplastic gliomas. (PMID: 27764782) Wang W … Zhao J (Oncotarget 2016) 2 3 54
  2. Transcriptome characterization elucidates signaling networks that control human ES cell growth and differentiation. (PMID: 15146197) Brandenberger R … Stanton LW (Nature biotechnology 2004) 3 54
  3. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3 54

Products for LINC01198 Gene

Sources for LINC01198 Gene