Aliases for LINC01187 Gene

Subcategory (RNA class) for LINC01187 Gene

lncRNA

Number of RNA Genes sources:

3 / 14

Aliases for LINC01187 Gene

  • Long Intergenic Non-Protein Coding RNA 1187 2 3 5
  • Kidney-Specific RNA 2 3
  • LINC01187 2 168
  • NONHSAG042192 92
  • HSALNG0046492 167
  • CTB-27N1.1 3
  • KIDR 3

External Ids for LINC01187 Gene

Previous GeneCards Identifiers for LINC01187 Gene

  • GC05M169620

Summaries for LINC01187 Gene

GeneCards Summary for LINC01187 Gene

LINC01187 (Long Intergenic Non-Protein Coding RNA 1187) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for LINC01187 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LINC01187 Gene

Genomics for LINC01187 Gene

GeneHancer (GH) Regulatory Elements for LINC01187 Gene

Promoters and enhancers for LINC01187 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH05J170251 Enhancer 1.2 Ensembl ENCODE CraniofacialAtlas dbSUPER 10.8 -55.0 -54957 6.6 EP300 RFX1 OSR2 ELK1 ZNF316 FOS NFE2 TAL1 STAT3 FOXA1 C5orf58 LCP2 LINC01187 KCNIP1-OT1 KCNMB1 lnc-KCNMB1-4 lnc-KCNMB1-5
GH05J170247 Enhancer 1 Ensembl dbSUPER 11 -49.6 -49557 0.2 ZNF10 MYC CTBP1 OSR2 NCOR1 MBD2 NFIC FOSL1 MYNN TRIM24 lnc-LCP2-3 LINC01187 lnc-KCNMB1-5 C5orf58 LCP2
GH05J170211 Enhancer 0.8 Ensembl ENCODE 7.1 -12.8 -12775 1.4 TCF12 RFX1 CTBP1 CEBPG FOSL2 FOXA1 PKNOX1 DPF2 ATF4 CEBPB LINC01187 HSALNG0046494 RF00017-5086
GH05J170261 Enhancer 0.6 ENCODE dbSUPER 5.5 -63.8 -63793 3.6 POLR2A SIX4 ZNF664 SMARCA4 GATA3 RUNX3 LCP2 C5orf58 KCNIP1-OT1 KCNMB1 LINC01187 lnc-KCNMB1-4 LINC01366 lnc-C5orf58-5
GH05J170183 Enhancer 0.7 Ensembl 0.4 +13.7 13748 2.8 ZNF217 CTCF REST RAD21 TRIM22 SMC3 TCF12 ZFHX2 IKZF3 IKZF1 LINC01187 HSALNG0046490
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LINC01187 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LINC01187 Gene

Genomic Locations for LINC01187 Gene
chr5:170,188,270-170,199,144
(GRCh38/hg38)
Size:
10,875 bases
Orientation:
Minus strand
chr5:169,618,583-169,626,145
(GRCh37/hg19)
Size:
7,563 bases
Orientation:
Minus strand

Genomic View for LINC01187 Gene

Genes around LINC01187 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LINC01187 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC01187 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINC01187 Gene

Proteins for LINC01187 Gene

Post-translational modifications for LINC01187 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC01187 Gene

Domains & Families for LINC01187 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LINC01187 Gene

Function for LINC01187 Gene

Phenotypes From GWAS Catalog for LINC01187 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC01187 Gene

Localization for LINC01187 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC01187 Gene

Pathways & Interactions for LINC01187 Gene

PathCards logo

SuperPathways for LINC01187 Gene

No Data Available
;

Gene Ontology (GO) - Biological Process for LINC01187 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for LINC01187 Gene

Drugs & Compounds for LINC01187 Gene

No Compound Related Data Available

Transcripts for LINC01187 Gene

mRNA/cDNA for LINC01187 Gene

10 RNACentral transcripts :
1 REFSEQ mRNAs :
2 NCBI additional mRNA sequence :
2 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
5 NONCODE transcripts :
5 LncBook transcripts :
9 LNCipedia transcripts :

Alternative Splicing Database (ASD) splice patterns (SP) for LINC01187 Gene

No ASD Table

Relevant External Links for LINC01187 Gene

GeneLoc Exon Structure for
LINC01187

Expression for LINC01187 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for LINC01187 Gene

mRNA differential expression in normal tissues according to GTEx for LINC01187 Gene

This gene is overexpressed in Kidney - Cortex (x48.6).

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for LINC01187

genes like me logo Genes that share expression patterns with LINC01187: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC01187 Gene

Orthologs for LINC01187 Gene

Evolution for LINC01187 Gene

ENSEMBL:
Gene Tree for LINC01187 (if available)
TreeFam:
Gene Tree for LINC01187 (if available)

No data available for Orthologs for LINC01187 Gene

Paralogs for LINC01187 Gene

No data available for Paralogs for LINC01187 Gene

Variants for LINC01187 Gene

Additional dbSNP identifiers (rs#s) for LINC01187 Gene

Structural Variations from Database of Genomic Variants (DGV) for LINC01187 Gene

Variant ID Type Subtype PubMed ID
nsv830547 CNV gain+loss 17160897

Additional Variant Information for LINC01187 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC01187

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP and Variation tolerance for LINC01187 Gene

Disorders for LINC01187 Gene

Additional Disease Information for LINC01187

No disorders were found for LINC01187 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LINC01187 Gene

Publications for LINC01187 Gene

  1. Genome-wide association study identifies three novel susceptibility loci for severe Acne vulgaris. (PMID: 24927181) Navarini AA … Barker JN (Nature communications 2014) 3 54
  2. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3 54

Products for LINC01187 Gene

Sources for LINC01187 Gene