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Aliases for LINC01186 Gene

Subcategory (RNA class) for LINC01186 Gene

non-coding RNA

Quality Score for this RNA gene is

13

Aliases for LINC01186 Gene

  • Long Intergenic Non-Protein Coding RNA 1186 2 3 5
  • ZNF674-1 3

External Ids for LINC01186 Gene

Previous GeneCards Identifiers for LINC01186 Gene

  • GC0XM046188

Summaries for LINC01186 Gene

GeneCards Summary for LINC01186 Gene

LINC01186 (Long Intergenic Non-Protein Coding RNA 1186) is an RNA Gene, and is affiliated with the non-coding RNA class. Diseases associated with LINC01186 include Lung Cancer.

Additional gene information for LINC01186 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LINC01186 Gene

Genomics for LINC01186 Gene

GeneHancer (GH) Regulatory Elements for LINC01186 Gene

Promoters and enhancers for LINC01186 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH0XJ046324 Promoter/Enhancer 1.8 Ensembl ENCODE dbSUPER 600.7 -0.2 -242 7.4 SP1 CEBPG RERE MAFK PPARG SP5 FOSL2 POLR2A HMG20B RXRA LINC01186 SLC9A7 ENSG00000231235
GH0XJ046315 Enhancer 1.3 FANTOM5 Ensembl ENCODE 0.4 +7.9 7874 8.1 ELF3 CEBPG MAFK TFE3 HNF1A ZNF644 KAT8 GATAD2A RXRB RCOR2 LINC01186 ACTBP1
GH0XJ046331 Enhancer 0.9 Ensembl ENCODE dbSUPER 0.4 -5.5 -5503 2.4 MAFK NFE2L2 SP1 FOSL2 POLR2A EGR2 LINC01186 ENSG00000231235
GH0XJ046325 Promoter 0.5 Ensembl 0.7 +3.6 3573 0.2 LINC01186 ACTBP1
GH0XJ046374 Enhancer 0.7 Ensembl ENCODE 0.3 -48.1 -48065 3.1 CTCF RAD21 SP1 SMC3 FOSL2 SIN3A ZNF654 ENSG00000231235 LINC01186
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LINC01186 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LINC01186 Gene

Genomic Locations for LINC01186 Gene
chrX:46,325,924-46,327,674
(GRCh38/hg38)
Size:
1,751 bases
Orientation:
Minus strand
chrX:46,185,359-46,187,080
(GRCh37/hg19)
Size:
1,722 bases
Orientation:
Minus strand

Genomic View for LINC01186 Gene

Genes around LINC01186 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LINC01186 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC01186 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINC01186 Gene

Proteins for LINC01186 Gene

Post-translational modifications for LINC01186 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC01186 Gene

Domains & Families for LINC01186 Gene

Gene Families for LINC01186 Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with LINC01186: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LINC01186 Gene

Function for LINC01186 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC01186 Gene

Localization for LINC01186 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC01186 Gene

Pathways & Interactions for LINC01186 Gene

PathCards logo

SuperPathways for LINC01186 Gene

No Data Available

Interacting Proteins for LINC01186 Gene

Gene Ontology (GO) - Biological Process for LINC01186 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LINC01186 Gene

Drugs & Compounds for LINC01186 Gene

No Compound Related Data Available

Transcripts for LINC01186 Gene

mRNA/cDNA for LINC01186 Gene

(3) Additional mRNA sequences :
(1) Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
(2) RNA Central transcripts :

Alternative Splicing Database (ASD) splice patterns (SP) for LINC01186 Gene

No ASD Table

Relevant External Links for LINC01186 Gene

GeneLoc Exon Structure for
LINC01186
ECgene alternative splicing isoforms for
LINC01186

Expression for LINC01186 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for LINC01186 Gene

mRNA differential expression in normal tissues according to GTEx for LINC01186 Gene

This gene is overexpressed in Heart - Left Ventricle (x20.0).

NURSA nuclear receptor signaling pathways regulating expression of LINC01186 Gene:

LINC01186
genes like me logo Genes that share expression patterns with LINC01186: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC01186 Gene

Orthologs for LINC01186 Gene

Evolution for LINC01186 Gene

ENSEMBL:
Gene Tree for LINC01186 (if available)
TreeFam:
Gene Tree for LINC01186 (if available)

No data available for Orthologs for LINC01186 Gene

Paralogs for LINC01186 Gene

No data available for Paralogs for LINC01186 Gene

Variants for LINC01186 Gene

Sequence variations from dbSNP and Humsavar for LINC01186 Gene

SNP ID Clin Chr 0X pos Variation AA Info Type
rs1003317764 -- 46,329,651(-) G/C upstream_transcript_variant
rs1004078321 -- 46,327,572(-) G/A non_coding_transcript_variant
rs1004639944 -- 46,329,489(-) A/C upstream_transcript_variant
rs1004685529 -- 46,329,087(-) A/G upstream_transcript_variant
rs1006220733 -- 46,329,543(-) C/T upstream_transcript_variant

Structural Variations from Database of Genomic Variants (DGV) for LINC01186 Gene

Variant ID Type Subtype PubMed ID
esv3576853 CNV gain 25503493
nsv526411 CNV gain 19592680

Additional Variant Information for LINC01186 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC01186

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for LINC01186 Gene

Disorders for LINC01186 Gene

MalaCards: The human disease database

(1) MalaCards diseases for LINC01186 Gene - From: LncRNADisease

Disorder Aliases PubMed IDs
lung cancer
  • adenocarcinoma of lung
- elite association - COSMIC cancer census association via MalaCards

Additional Disease Information for LINC01186

genes like me logo Genes that share disorders with LINC01186: view

No data available for UniProtKB/Swiss-Prot and Genatlas for LINC01186 Gene

Publications for LINC01186 Gene

  1. Long noncoding RNA LINC01186, regulated by TGF-β/SMAD3, inhibits migration and invasion through Epithelial-Mesenchymal-Transition in lung cancer. (PMID: 28119085) Hao Y … Chen R (Gene 2017) 2 3 58

Products for LINC01186 Gene

Sources for LINC01186 Gene

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