Aliases for LINC01185 Gene

Data sources for LINC01185 Gene:

RNA type for LINC01185 Gene

lncRNA

Aliases for LINC01185 Gene

External Ids for LINC01185 Gene

Previous GeneCards Identifiers for LINC01185 Gene

  • GC02M061055

Summaries for LINC01185 Gene

GeneCards Summary for LINC01185 Gene

LINC01185 (Long Intergenic Non-Protein Coding RNA 1185) is an RNA Gene, and is affiliated with the lncRNA class. Diseases associated with LINC01185 include Chromosome 2P16.1-P15 Deletion Syndrome and Psoriasis 11.

Additional gene information for LINC01185 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LINC01185 Gene

Genomics for LINC01185 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for LINC01185 Gene
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LINC01185 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for LINC01185 Gene

Latest Assembly
chr2:60,822,936-60,881,470
(GRCh38/hg38)
Size:
58,535 bases
Orientation:
Minus strand

Previous Assembly
chr2:61,074,895-61,108,449
(GRCh37/hg19 by Entrez Gene)
Size:
33,555 bases
Orientation:
Minus strand

chr2:61,052,267-61,108,449
(GRCh37/hg19 by Ensembl)
Size:
56,183 bases
Orientation:
Minus strand

Genomic View for LINC01185 Gene

Genes around LINC01185 on UCSC Golden Path with GeneCards custom track
LINC01185 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Cytogenetic band:
LINC01185 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC01185 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINC01185 Gene

Proteins for LINC01185 Gene

Post-translational modifications for LINC01185 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC01185 Gene

Domains & Families for LINC01185 Gene

Gene Families for LINC01185 Gene

genes like me logo Genes that share domains with LINC01185: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LINC01185 Gene

Function for LINC01185 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC01185 Gene

Localization for LINC01185 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC01185 Gene

Pathways & Interactions for LINC01185 Gene

PathCards logo

SuperPathways for LINC01185 Gene

No Data Available

Gene Ontology (GO) - Biological Process for LINC01185 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for LINC01185 Gene

Drugs & Compounds for LINC01185 Gene

No Compound Related Data Available

Transcripts for LINC01185 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for LINC01185 Gene

RNAcentral Transcript ID RNA Type Length (nts) # of Sources Source Identifiers and Annotations
URS00005C12D0_9606 lncRNA 1708 4

RefSeq: NR_033980,

Ensembl: ENST00000452343 (view in UCSC) ,

LNCipedia: LINC01185:2,

NONCODE: NONHSAT070912.2,

URS0000EEFFD0_9606 lncRNA 2620 1

Ensembl: ENST00000439412 (view in UCSC) ,

URS0000D57611_9606 lncRNA 2824 2

LncBook: HSALNT0032246,

LNCipedia: LINC01185:7,

URS0000D582C5_9606 lncRNA 1783 2

LncBook: HSALNT0032258,

LNCipedia: LINC01185:9,

URS00009BA5FA_9606 lncRNA 686 2

LncBook: HSALNT0032256,

NONCODE: NONHSAT184706.1,

LINC01185 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for LINC01185 Gene

1 NCBI additional mRNA sequence :

Alternative Splicing Database (ASD) splice patterns (SP) for LINC01185 Gene

No ASD Table

Relevant External Links for LINC01185 Gene

GeneLoc Exon Structure for
LINC01185

Expression for LINC01185 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for LINC01185 Gene

mRNA differential expression in normal tissues according to GTEx for LINC01185 Gene

This gene is overexpressed in Testis (x7.5), Brain - Caudate (basal ganglia) (x4.6), Brain - Nucleus accumbens (basal ganglia) (x4.3), and Brain - Amygdala (x4.3).

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for LINC01185

genes like me logo Genes that share expression patterns with LINC01185: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC01185 Gene

Orthologs for LINC01185 Gene

Evolution for LINC01185 Gene

ENSEMBL:
Gene Tree for LINC01185 (if available)
TreeFam:
Gene Tree for LINC01185 (if available)
Alliance of Genome Resources:
Additional Orthologs for LINC01185

No data available for Orthologs for LINC01185 Gene

Paralogs for LINC01185 Gene

No data available for Paralogs for LINC01185 Gene

Variants for LINC01185 Gene

dbSNP identifiers (rs#s) for variants without ClinVar clinical significance for LINC01185 Gene

All consequence types are included: molecular consequences (e.g. missense, synonymous), and location-based (e.g. intron, upstream).

Structural Variations from Database of Genomic Variants (DGV) for LINC01185 Gene

Variant ID Type Subtype PubMed ID
dgv3859n100 CNV gain 25217958
dgv6908n54 CNV gain 21841781
esv2661364 CNV deletion 23128226
esv3591007 CNV gain 21293372
esv3591010 CNV loss 21293372
esv3892570 CNV loss 25118596
nsv1123330 CNV deletion 24896259
nsv524802 CNV loss 19592680
nsv834215 CNV loss 17160897
nsv961780 CNV duplication 23825009

Additional Variant Information for LINC01185 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC01185
Leiden Open Variation Database (LOVD)
LINC01185

SNP Genotyping and Copy Number Assays for research

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP and Variation tolerance for LINC01185 Gene

Disorders for LINC01185 Gene

MalaCards: The human disease database

(2) MalaCards diseases for LINC01185 Gene - From: COP

Disorder Aliases PubMed IDs
chromosome 2p16.1-p15 deletion syndrome
  • 2p15-p16.1 microdeletion syndrome
psoriasis 11
  • psoriasis 11, susceptibility to
- elite association - COSMIC cancer census association via MalaCards

Additional Disease Information for LINC01185

genes like me logo Genes that share disorders with LINC01185: view

No data available for UniProtKB/Swiss-Prot and Genatlas for LINC01185 Gene

Publications for LINC01185 Gene

  1. Genome-wide meta-analysis of psoriatic arthritis identifies susceptibility locus at REL. (PMID: 22170493) Ellinghaus E … Franke A (The Journal of investigative dermatology 2012) 3
  2. A genome-wide association study identifies new psoriasis susceptibility loci and an interaction between HLA-C and ERAP1. (PMID: 20953190) Genetic Analysis of Psoriasis Consortium & the Wellcome Trust Case Control Consortium 2 … Trembath RC (Nature genetics 2010) 3
  3. Genome-wide association analysis identifies three psoriasis susceptibility loci. (PMID: 20953189) Stuart PE … Elder JT (Nature genetics 2010) 3

Products for LINC01185 Gene

Sources for LINC01185 Gene