Aliases for LINC01185 Gene

Subcategory (RNA class) for LINC01185 Gene

lncRNA

Number of RNA Genes sources:

3 / 14

Aliases for LINC01185 Gene

  • Long Intergenic Non-Protein Coding RNA 1185 2 3 5
  • LINC01185 2 168
  • NONHSAG027864 92
  • HSALNG0015253 167

External Ids for LINC01185 Gene

Previous GeneCards Identifiers for LINC01185 Gene

  • GC02M061055

Summaries for LINC01185 Gene

GeneCards Summary for LINC01185 Gene

LINC01185 (Long Intergenic Non-Protein Coding RNA 1185) is an RNA Gene, and is affiliated with the lncRNA class. Diseases associated with LINC01185 include Chromosome 2P16.1-P15 Deletion Syndrome and Lymph Node Cancer.

Additional gene information for LINC01185 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LINC01185 Gene

Genomics for LINC01185 Gene

GeneHancer (GH) Regulatory Elements for LINC01185 Gene

Promoters and enhancers for LINC01185 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH02J060805 Enhancer 1.3 FANTOM5 Ensembl ENCODE 12.5 +73.3 73322 5.8 CTCF NRF1 ZIC2 ZNF423 RELA TOE1 MYC RAD21 CTBP1 TAF9B REL LINC01185 PAPOLG AHSA2P LOC105374758 ENSG00000270820 piR-43105-358 lnc-PUS10-3
GH02J060837 Enhancer 1.2 FANTOM5 Ensembl ENCODE 12.2 +41.2 41178 5.1 RELA MEF2C REST POLR2A BCL11A TCF12 RXRA CBFB CTCF ARNT PAPOLG REL LINC01185 KIAA1841 AHSA2P PUS10 ENSG00000232713 C2orf74 PEX13 lnc-PUS10-2
GH02J060926 Promoter/Enhancer 1.2 Ensembl ENCODE dbSUPER 11.9 -45.6 -45618 1.9 FOXA2 OSR2 ZBTB17 RBM22 SPI1 GABPA FOXA1 PRDM6 FEZF1 POLR2A ENSG00000267520 LINC01185 REL PAPOLG PUS10 NONOP2
GH02J060964 Enhancer 1.1 Ensembl ENCODE dbSUPER 11.3 -85.0 -84978 4.4 EP300 RELA MEF2C RCOR1 TRIM22 BCL11A SRF YY1 ARNT MEF2B LINC01185 REL AHSA2P KIAA1841 RF00017-3201 HSALNG0015265 PUS10
GH02J060833 Enhancer 1 Ensembl ENCODE 12.2 +46.0 46021 4.4 ZBTB40 RELA MEF2C BCL11A TCF12 CBFB ZNF384 CEBPG ARNT MEF2B lnc-PUS10-2 LINC01185 REL PAPOLG KIAA1841 RPL21P33
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LINC01185 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LINC01185 Gene

Genomic Locations for LINC01185 Gene
chr2:60,822,937-60,881,422
(GRCh38/hg38)
Size:
58,486 bases
Orientation:
Minus strand
chr2:61,052,267-61,108,449
(GRCh37/hg19)
Size:
56,183 bases
Orientation:
Minus strand

Genomic View for LINC01185 Gene

Genes around LINC01185 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LINC01185 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC01185 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINC01185 Gene

Proteins for LINC01185 Gene

Post-translational modifications for LINC01185 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC01185 Gene

Domains & Families for LINC01185 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LINC01185 Gene

Function for LINC01185 Gene

Phenotypes From GWAS Catalog for LINC01185 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC01185 Gene

Localization for LINC01185 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC01185 Gene

Pathways & Interactions for LINC01185 Gene

PathCards logo

SuperPathways for LINC01185 Gene

No Data Available
;

Gene Ontology (GO) - Biological Process for LINC01185 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for LINC01185 Gene

Drugs & Compounds for LINC01185 Gene

No Compound Related Data Available

Transcripts for LINC01185 Gene

mRNA/cDNA for LINC01185 Gene

14 RNACentral transcripts :
1 REFSEQ mRNAs :
1 NCBI additional mRNA sequence :
2 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
6 NONCODE transcripts :
5 LncBook transcripts :
9 LNCipedia transcripts :

Alternative Splicing Database (ASD) splice patterns (SP) for LINC01185 Gene

No ASD Table

Relevant External Links for LINC01185 Gene

GeneLoc Exon Structure for
LINC01185

Expression for LINC01185 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for LINC01185 Gene

mRNA differential expression in normal tissues according to GTEx for LINC01185 Gene

This gene is overexpressed in Testis (x7.5), Brain - Caudate (basal ganglia) (x4.6), Brain - Nucleus accumbens (basal ganglia) (x4.3), and Brain - Amygdala (x4.3).

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for LINC01185

genes like me logo Genes that share expression patterns with LINC01185: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC01185 Gene

Orthologs for LINC01185 Gene

Evolution for LINC01185 Gene

ENSEMBL:
Gene Tree for LINC01185 (if available)
TreeFam:
Gene Tree for LINC01185 (if available)

No data available for Orthologs for LINC01185 Gene

Paralogs for LINC01185 Gene

No data available for Paralogs for LINC01185 Gene

Variants for LINC01185 Gene

Additional dbSNP identifiers (rs#s) for LINC01185 Gene

Structural Variations from Database of Genomic Variants (DGV) for LINC01185 Gene

Variant ID Type Subtype PubMed ID
dgv3859n100 CNV gain 25217958
dgv6908n54 CNV gain 21841781
esv2661364 CNV deletion 23128226
esv3591007 CNV gain 21293372
esv3591010 CNV loss 21293372
esv3892570 CNV loss 25118596
nsv1123330 CNV deletion 24896259
nsv524802 CNV loss 19592680
nsv834215 CNV loss 17160897
nsv961780 CNV duplication 23825009

Additional Variant Information for LINC01185 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC01185

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP and Variation tolerance for LINC01185 Gene

Disorders for LINC01185 Gene

MalaCards: The human disease database

(2) MalaCards diseases for LINC01185 Gene - From: DISEASES

Disorder Aliases PubMed IDs
chromosome 2p16.1-p15 deletion syndrome
  • 2p15-p16.1 microdeletion syndrome
lymph node cancer
  • lymph node neoplasm
- elite association - COSMIC cancer census association via MalaCards

Additional Disease Information for LINC01185

genes like me logo Genes that share disorders with LINC01185: view

No data available for UniProtKB/Swiss-Prot and Genatlas for LINC01185 Gene

Publications for LINC01185 Gene

  1. Genome-wide meta-analysis of psoriatic arthritis identifies susceptibility locus at REL. (PMID: 22170493) Ellinghaus E … Franke A (The Journal of investigative dermatology 2012) 3 54
  2. A genome-wide association study identifies new psoriasis susceptibility loci and an interaction between HLA-C and ERAP1. (PMID: 20953190) Genetic Analysis of Psoriasis Consortium & the Wellcome Trust Case Control Consortium 2 … Trembath RC (Nature genetics 2010) 3 54
  3. Genome-wide association analysis identifies three psoriasis susceptibility loci. (PMID: 20953189) Stuart PE … Elder JT (Nature genetics 2010) 3 54

Products for LINC01185 Gene

Sources for LINC01185 Gene