Aliases for LINC01179 Gene

Subcategory (RNA class) for LINC01179 Gene

lncRNA

Number of RNA Genes sources:

3 / 17

Aliases for LINC01179 Gene

  • Long Intergenic Non-Protein Coding RNA 1179 2 3 5
  • LINC01179 2 5 165
  • NONHSAG039273.2 91
  • HSALNG0038365 164

External Ids for LINC01179 Gene

Previous GeneCards Identifiers for LINC01179 Gene

  • GC04P166607

Summaries for LINC01179 Gene

GeneCards Summary for LINC01179 Gene

LINC01179 (Long Intergenic Non-Protein Coding RNA 1179) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for LINC01179 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LINC01179 Gene

Genomics for LINC01179 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for LINC01179 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH04J165683 Enhancer 0.5 Ensembl ENCODE 600.7 -0.2 -184 1.3 JUND SMARCA4 LINC01179 TLL1 ENSG00000250725 lnc-CPE-3 ENSG00000287424 CPE
GH04J165682 Enhancer 0.2 FANTOM5 600.7 -1.8 -1831 0.2 LINC01179 ENSG00000250725 lnc-CPE-3 ENSG00000287424 TLL1 CPE
GH04J165680 Enhancer 0.3 Ensembl 0.7 -3.6 -3638 0.4 ATF2 LINC01179 ENSG00000250725 lnc-CPE-3 ENSG00000287424 TLL1 CPE
GH04J165721 Enhancer 0.6 Ensembl 0.3 +39.2 39162 3.6 FOXA1 SP1 FOXA2 CEBPB ATF3 YY1 ZBTB33 JUND EP300 RAD21 LOC101928131 ENSG00000287424 LINC01179 TLL1 CPE
GH04J165709 Enhancer 0.5 Ensembl 0.3 +25.4 25361 1.2 FOXA1 SP1 FOXA2 HNF4A RXRA PKNOX1 LINC01179 LOC101928131 ENSG00000287424 TLL1 CPE
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LINC01179 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for LINC01179 Gene

Genomic Locations for LINC01179 Gene
chr4:165,684,639-165,762,778
(GRCh38/hg38)
Size:
78,140 bases
Orientation:
Plus strand
chr4:166,605,791-166,683,930
(GRCh37/hg19)
Size:
78,140 bases
Orientation:
Plus strand

Genomic View for LINC01179 Gene

Genes around LINC01179 on UCSC Golden Path with GeneCards custom track
LINC01179 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Cytogenetic band:
LINC01179 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC01179 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINC01179 Gene

Proteins for LINC01179 Gene

Post-translational modifications for LINC01179 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC01179 Gene

Domains & Families for LINC01179 Gene

Gene Families for LINC01179 Gene

genes like me logo Genes that share domains with LINC01179: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LINC01179 Gene

Function for LINC01179 Gene

Phenotypes From GWAS Catalog for LINC01179 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC01179 Gene

Localization for LINC01179 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC01179 Gene

Pathways & Interactions for LINC01179 Gene

PathCards logo

SuperPathways for LINC01179 Gene

No Data Available

Gene Ontology (GO) - Biological Process for LINC01179 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for LINC01179 Gene

Drugs & Compounds for LINC01179 Gene

No Compound Related Data Available

Transcripts for LINC01179 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for LINC01179 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS00004A2BD9_9606 lncRNA 2163 6

HGNC: 49556,

RefSeq: NR_121676,

Ensembl: ENST00000507838 (view in UCSC) ,

LncBook: HSALNT0080437,

LNCipedia: LINC01179:1,

NONCODE: NONHSAT099110.2,

URS00009B459F_9606 lncRNA 5170 2

LncBook: HSALNT0080441,

NONCODE: NONHSAT199367.1,

LINC01179 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for LINC01179 Gene

1 NCBI additional mRNA sequence :

Alternative Splicing Database (ASD) splice patterns (SP) for LINC01179 Gene

No ASD Table

Relevant External Links for LINC01179 Gene

GeneLoc Exon Structure for
LINC01179

Expression for LINC01179 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for LINC01179 Gene

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for LINC01179

genes like me logo Genes that share expression patterns with LINC01179: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC01179 Gene

Orthologs for LINC01179 Gene

Evolution for LINC01179 Gene

ENSEMBL:
Gene Tree for LINC01179 (if available)
TreeFam:
Gene Tree for LINC01179 (if available)

No data available for Orthologs for LINC01179 Gene

Paralogs for LINC01179 Gene

No data available for Paralogs for LINC01179 Gene

Variants for LINC01179 Gene

Additional dbSNP identifiers (rs#s) for LINC01179 Gene

Structural Variations from Database of Genomic Variants (DGV) for LINC01179 Gene

Variant ID Type Subtype PubMed ID
esv2675884 CNV deletion 23128226
esv3364218 CNV insertion 20981092
esv3433232 CNV insertion 20981092
nsv1123862 CNV deletion 24896259
nsv830141 CNV gain 17160897

Additional Variant Information for LINC01179 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC01179

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP and Variation tolerance for LINC01179 Gene

Disorders for LINC01179 Gene

Additional Disease Information for LINC01179

No disorders were found for LINC01179 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LINC01179 Gene

Publications for LINC01179 Gene

No publications were found for LINC01179 Gene.

Products for LINC01179 Gene

Sources for LINC01179 Gene