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LINC01177 Gene(RNA Gene)

Long Intergenic Non-Protein Coding RNA 1177

GCID:
GC16M009441
GIFtS:
9
Genes Participants
UDN Logo

Aliases for LINC01177 Gene

Subcategory (RNA class) for LINC01177 Gene

non-coding RNA

Quality Score for this RNA gene is

13

Aliases for LINC01177 Gene

  • Long Intergenic Non-Protein Coding RNA 1177 2 3 5

External Ids for LINC01177 Gene

Previous GeneCards Identifiers for LINC01177 Gene

  • GC00U934424

Summaries for LINC01177 Gene

GeneCards Summary for LINC01177 Gene

LINC01177 (Long Intergenic Non-Protein Coding RNA 1177) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for LINC01177 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LINC01177 Gene

Genomics for LINC01177 Gene

GeneHancer (GH) Regulatory Elements for LINC01177 Gene

Promoters and enhancers for LINC01177 Gene
GeneHancer (GH) Identifier GH Type GH
Score		 GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites		 Gene Targets
GH16J009446 Enhancer 0.7 ENCODE 600.7 -2.0 -1990 0.5 ZNF560 ZBTB8A PRDM12 ZNF140 ZNF266 ZNF623 ZBTB11 ZNF213 ZC3H11A ZNF202 LINC01177 USP7 ENSG00000260276 ENSG00000260349 LINC01195 LOC101927026
GH16J009448 Enhancer 0.7 Ensembl 600.7 -1.3 -1316 0.6 ZNF560 ZBTB8A PRDM12 ZNF140 ZNF266 ZBTB11 ZNF213 ZC3H11A ZNF202 ZNF654 LINC01177 USP7 ENSG00000260276 ENSG00000260349 LINC01195 LOC101927026
GH16J009440 Enhancer 0.4 Ensembl 0.7 +3.8 3784 0.8 MAFK PKNOX1 LINC01177 GC16M009399 LOC101927026
GH16J009447 Enhancer 0.2 ENCODE 0.7 -2.3 -2334 0.2 LINC01177 LINC01195 LOC101927026
GH16J009442 Enhancer 0.2 Ensembl 0.7 +2.4 2384 0.8 LINC01177 GC16M009399 LOC101927026
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LINC01177 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LINC01177 Gene

Genomic Locations for LINC01177 Gene
chr16:9,441,294-9,444,985
(GRCh38/hg38)
Size:
3,692 bases
Orientation:
Minus strand

Genomic View for LINC01177 Gene

Genes around LINC01177 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LINC01177 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC01177 Gene
GeneLoc Logo Genomic Neighborhood • Exon Structure • Gene Density

RefSeq DNA sequence for LINC01177 Gene

Proteins for LINC01177 Gene

Products:

  1. Antibody
  2. Protein
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Post-translational modifications for LINC01177 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC01177 Gene

Domains & Families for LINC01177 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LINC01177 Gene

Function for LINC01177 Gene

Products:

  1. Animal Model
  2. CRISPR
  3. miRNA
  4. Inhibitory RNA
  5. Clone
  6. Cell Line

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC01177 Gene

Localization for LINC01177 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC01177 Gene

Pathways & Interactions for LINC01177 Gene

GeneAnalytics - gene set analysis. Cells, Diseases, Pathways, Function and Compounds, relevant to your gene set. Powered by GeneCards
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SuperPathways for LINC01177 Gene

No Data Available

Interacting Proteins for LINC01177 Gene

Gene Ontology (GO) - Biological Process for LINC01177 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LINC01177 Gene

Drugs & Compounds for LINC01177 Gene

Products:

  1. Drug
GeneAnalytics - gene set analysis. Cells, Diseases, Pathways, Function and Compounds, relevant to your gene set. Powered by GeneCards
No Compound Related Data Available

Transcripts for LINC01177 Gene

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  1. CRISPR
  2. miRNA
  3. Inhibitory RNA
  4. Clone

mRNA/cDNA for LINC01177 Gene

(1) Additional mRNA sequences :
(1) Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
(1) RNA Central transcripts :

Alternative Splicing Database (ASD) splice patterns (SP) for LINC01177 Gene

No ASD Table

Relevant External Links for LINC01177 Gene

GeneLoc Exon Structure for
LINC01177
ECgene alternative splicing isoforms for
LINC01177

Expression for LINC01177 Gene

Products:

  1. Primer
  2. Gene Expression Assay
GeneAnalytics - gene set analysis. Cells, Diseases, Pathways, Function and Compounds, relevant to your gene set. Powered by GeneCards

NURSA nuclear receptor signaling pathways regulating expression of LINC01177 Gene:

LINC01177
No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC01177 Gene

Orthologs for LINC01177 Gene

Evolution for LINC01177 Gene

ENSEMBL:
Gene Tree for LINC01177 (if available)
TreeFam:
Gene Tree for LINC01177 (if available)

No data available for Orthologs for LINC01177 Gene

Paralogs for LINC01177 Gene

No data available for Paralogs for LINC01177 Gene

Variants for LINC01177 Gene

Products:

  1. SNP Genotyping and Copy Number Assay
VarElect - NGS phenotyper. Rapid prioritization of variants from NGS data powered by 100+ GeneCards sources

Sequence variations from dbSNP and Humsavar for LINC01177 Gene

SNP ID Clin Chr 16 pos Variation AA Info Type
rs1000185181 -- 9,443,851(-) G/A intron_variant
rs1000393691 -- 9,442,069(-) C/G/T intron_variant
rs1000452081 -- 9,446,308(-) G/T upstream_transcript_variant
rs1000529617 -- 9,443,596(-) T/A intron_variant
rs1000866081 -- 9,445,134(-) C/T upstream_transcript_variant

Additional Variant Information for LINC01177 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC01177

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for LINC01177 Gene

Disorders for LINC01177 Gene

Additional Disease Information for LINC01177

ATLAS of Genetics and Cytogenetics in Oncology and Haematology

No disorders were found for LINC01177 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LINC01177 Gene

Publications for LINC01177 Gene

No publications were found for LINC01177 Gene.

No data available for External Links for LINC01177 Gene

Products for LINC01177 Gene

Sources for LINC01177 Gene

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