LINC01177 Gene (RNA Gene)

Long Intergenic Non-Protein Coding RNA 1177

GC16M009441
GIFtS:
9
See more...

Aliases for LINC01177 Gene

Subcategory (RNA class) for LINC01177 Gene

lncRNA

Number of RNA Genes sources:

2 / 17

Aliases for LINC01177 Gene

  • Long Intergenic Non-Protein Coding RNA 1177 2 3 5
  • LINC01177 2 5 165
  • NONHSAG018542.2 91

External Ids for LINC01177 Gene

Previous GeneCards Identifiers for LINC01177 Gene

  • GC00U934424

Summaries for LINC01177 Gene

GeneCards Summary for LINC01177 Gene

LINC01177 (Long Intergenic Non-Protein Coding RNA 1177) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for LINC01177 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LINC01177 Gene

Genomics for LINC01177 Gene

GeneHancer (GH) Regulatory Elements Pubs

Download GeneHancer 2017 data
Promoters and enhancers for LINC01177 Gene
GeneHancer (GH) Identifier GH Type GH
Score		 GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites		 Gene Targets
GH16J009446 Enhancer 0.6 ENCODE 600.7 -2.0 -1990 0.5 ZNF140 ZNF266 ZNF623 ZBTB11 ZNF213 ZNF654 ZNF202 ZC3H11A ZFP64 ZNF433 LINC01177 USP7 ENSG00000260276 ENSG00000260349 LINC01195 ENSG00000260071 LOC101927026 C16orf72 GRIN2A
GH16J009448 Enhancer 0.6 Ensembl 600.7 -1.3 -1316 0.6 ZNF140 ZNF266 ZBTB11 ZNF213 ZNF654 ZNF202 ZC3H11A ZFP64 ZNF433 ZNF781 LINC01177 USP7 ENSG00000260276 ENSG00000260349 LINC01195 ENSG00000260071 LOC101927026 C16orf72 GRIN2A
GH16J009444 Enhancer 0.2 Ensembl 600.7 +0.7 684 0.2 LINC01177 piR-37624-001 ENSG00000260071 LOC101927026 C16orf72 GRIN2A
GH16J009440 Enhancer 0.4 Ensembl 0.7 +3.8 3784 0.8 PKNOX1 MAFF MAFK LINC01177 piR-37624-001 ENSG00000260071 LOC101927026 C16orf72 GRIN2A
GH16J009447 Enhancer 0.3 ENCODE 0.7 -2.3 -2334 0.2 SMARCA4 LINC01177 LINC01195 ENSG00000260071 LOC101927026 C16orf72 GRIN2A
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LINC01177 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for LINC01177 Gene

Genomic Locations for LINC01177 Gene
chr16:9,441,294-9,444,985
(GRCh38/hg38)
Size:
3,692 bases
Orientation:
Minus strand

Genomic View for LINC01177 Gene

Genes around LINC01177 on UCSC Golden Path with GeneCards custom track
LINC01177 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Cytogenetic band:
LINC01177 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC01177 Gene
GeneLoc Logo Genomic Neighborhood • Exon Structure • Gene Density

RefSeq DNA sequence for LINC01177 Gene

Proteins for LINC01177 Gene

Products:

  1. Antibody
  2. Protein
  3. Assay

Post-translational modifications for LINC01177 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC01177 Gene

Domains & Families for LINC01177 Gene

Gene Families for LINC01177 Gene

HGNC:
genes like me logo Genes that share domains with LINC01177: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LINC01177 Gene

Function for LINC01177 Gene

Products:

  1. Animal Model
  2. CRISPR
  3. miRNA
  4. Inhibitory RNA
  5. Clone
  6. Cell Line

Phenotypes From GWAS Catalog for LINC01177 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC01177 Gene

Localization for LINC01177 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC01177 Gene

Pathways & Interactions for LINC01177 Gene

PathCards logo

SuperPathways for LINC01177 Gene

No Data Available

Gene Ontology (GO) - Biological Process for LINC01177 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for LINC01177 Gene

Drugs & Compounds for LINC01177 Gene

Products:

  1. Drug
No Compound Related Data Available

Transcripts for LINC01177 Gene

Products:

  1. CRISPR
  2. miRNA
  3. Inhibitory RNA
  4. Clone

Non-coding RNA (ncRNA) Transcripts from RNAcentral for LINC01177 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS00004173D6_9606 lncRNA 536 5

HGNC: 49549,

RefSeq: NR_126397,

Ensembl: ENST00000568030 (view in UCSC) ,

LNCipedia: LINC01177:1,

NONCODE: NONHSAT140462.2,

LINC01177 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for LINC01177 Gene

1 NCBI additional mRNA sequence :

Alternative Splicing Database (ASD) splice patterns (SP) for LINC01177 Gene

No ASD Table

Relevant External Links for LINC01177 Gene

GeneLoc Exon Structure for
LINC01177

Expression for LINC01177 Gene

Products:

  1. Primer
  2. Gene Expression Assay

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for LINC01177 Gene

mRNA expression in normal human tissues for LINC01177 Gene
mRNA expression by GTEx for LINC01177 Gene
genes like me logo Genes that share expression patterns with LINC01177: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC01177 Gene

Orthologs for LINC01177 Gene

Evolution for LINC01177 Gene

ENSEMBL:
Gene Tree for LINC01177 (if available)
TreeFam:
Gene Tree for LINC01177 (if available)

No data available for Orthologs for LINC01177 Gene

Paralogs for LINC01177 Gene

No data available for Paralogs for LINC01177 Gene

Variants for LINC01177 Gene

Products:

  1. SNP Genotyping and Copy Number Assay

Additional dbSNP identifiers (rs#s) for LINC01177 Gene

Additional Variant Information for LINC01177 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC01177

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for LINC01177 Gene

Disorders for LINC01177 Gene

Additional Disease Information for LINC01177

ATLAS of Genetics and Cytogenetics in Oncology and Haematology

No disorders were found for LINC01177 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LINC01177 Gene

Publications for LINC01177 Gene

No publications were found for LINC01177 Gene.

No data available for Mastermind for LINC01177 Gene

Products for LINC01177 Gene

Sources for LINC01177 Gene