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Aliases for LINC01173 Gene

Subcategory (RNA class) for LINC01173 Gene

non-coding RNA

Quality Score for this RNA gene is

13

Aliases for LINC01173 Gene

  • Long Intergenic Non-Protein Coding RNA 1173 2 3 5
  • TCONS_00004057 3

External Ids for LINC01173 Gene

Previous GeneCards Identifiers for LINC01173 Gene

  • GC00U935853

Summaries for LINC01173 Gene

GeneCards Summary for LINC01173 Gene

LINC01173 (Long Intergenic Non-Protein Coding RNA 1173) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for LINC01173 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LINC01173 Gene

Genomics for LINC01173 Gene

GeneHancer (GH) Regulatory Elements for LINC01173 Gene

Promoters and enhancers for LINC01173 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH02J234682 Enhancer 1 ENCODE dbSUPER 600.7 -0.1 -113 0.9 ZNF473 ZSCAN21 CREB1 YBX1 ZIC2 ZNF776 RCOR2 ZBTB26 ZNF157 ZBTB17 LINC01173 GC02P234651
GH02J234683 Enhancer 0.6 dbSUPER 600.7 +0.8 828 0.6 ZSCAN21 ZNF776 ZNF157 SALL1 NONO ZNF335 ZNF514 ZNF280C PRDM2 ZNF416 LINC01173 HSPA8P10
GH02J234685 Promoter/Enhancer 1.3 Ensembl ENCODE dbSUPER 0.7 +3.8 3833 1.5 SP1 SP5 GATAD2A POLR2A SOX13 USF1 TEAD1 DRAP1 GATAD1 BCL6 LINC01173 HSPA8P10
GH02J234675 Enhancer 1.2 ENCODE dbSUPER 0.7 -4.0 -3960 5.6 ELF3 CEBPG RERE TFE3 ELF1 SP1 HNF1A PPARG SP5 ZNF644 LINC01173 GC02P234651
GH02J234673 Promoter/Enhancer 1.5 Ensembl ENCODE dbSUPER 0.4 -8.0 -7966 2.3 CEBPA GATAD2A NFKBIZ RXRB ATF7 ZNF140 SOX13 SP1 ZKSCAN8 FOXA2 LINC01173 GC02P234651
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LINC01173 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LINC01173 Gene

Genomic Locations for LINC01173 Gene
chr2:234,682,668-234,717,764
(GRCh38/hg38)
Size:
35,097 bases
Orientation:
Plus strand

Genomic View for LINC01173 Gene

Genes around LINC01173 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LINC01173 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC01173 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINC01173 Gene

Proteins for LINC01173 Gene

Post-translational modifications for LINC01173 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC01173 Gene

Domains & Families for LINC01173 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LINC01173 Gene

Function for LINC01173 Gene

Phenotypes From GWAS Catalog for LINC01173 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC01173 Gene

Localization for LINC01173 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC01173 Gene

Pathways & Interactions for LINC01173 Gene

PathCards logo

SuperPathways for LINC01173 Gene

No Data Available

Interacting Proteins for LINC01173 Gene

Gene Ontology (GO) - Biological Process for LINC01173 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LINC01173 Gene

Drugs & Compounds for LINC01173 Gene

No Compound Related Data Available

Transcripts for LINC01173 Gene

mRNA/cDNA for LINC01173 Gene

(1) Additional mRNA sequences :
(1) Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
(1) RNA Central transcripts :

Alternative Splicing Database (ASD) splice patterns (SP) for LINC01173 Gene

No ASD Table

Relevant External Links for LINC01173 Gene

GeneLoc Exon Structure for
LINC01173
ECgene alternative splicing isoforms for
LINC01173

Expression for LINC01173 Gene

NURSA nuclear receptor signaling pathways regulating expression of LINC01173 Gene:

LINC01173
No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC01173 Gene

Orthologs for LINC01173 Gene

Evolution for LINC01173 Gene

ENSEMBL:
Gene Tree for LINC01173 (if available)
TreeFam:
Gene Tree for LINC01173 (if available)

No data available for Orthologs for LINC01173 Gene

Paralogs for LINC01173 Gene

No data available for Paralogs for LINC01173 Gene

Variants for LINC01173 Gene

Sequence variations from dbSNP and Humsavar for LINC01173 Gene

SNP ID Clin Chr 02 pos Variation AA Info Type
rs1000087800 -- 234,713,836(+) T/C/G intron_variant
rs1000182851 -- 234,700,387(+) A/T intron_variant
rs1000261883 -- 234,708,330(+) G/T intron_variant
rs1000313191 -- 234,708,134(+) G/A intron_variant
rs1000337852 -- 234,702,249(+) A/G intron_variant

Additional Variant Information for LINC01173 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC01173

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for LINC01173 Gene

Disorders for LINC01173 Gene

Additional Disease Information for LINC01173

No disorders were found for LINC01173 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LINC01173 Gene

Publications for LINC01173 Gene

No publications were found for LINC01173 Gene.

Products for LINC01173 Gene

Sources for LINC01173 Gene

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