Aliases for LINC01169 Gene

Subcategory (RNA class) for LINC01169 Gene

lncRNA

Number of RNA Genes sources:

3 / 14

Aliases for LINC01169 Gene

  • Long Intergenic Non-Protein Coding RNA 1169 2 3 5
  • LINC01169 2 168
  • NONHSAG017229 92
  • HSALNG0106711 167

External Ids for LINC01169 Gene

Previous GeneCards Identifiers for LINC01169 Gene

  • GC15U901705

Summaries for LINC01169 Gene

GeneCards Summary for LINC01169 Gene

LINC01169 (Long Intergenic Non-Protein Coding RNA 1169) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for LINC01169 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LINC01169 Gene

Genomics for LINC01169 Gene

GeneHancer (GH) Regulatory Elements for LINC01169 Gene

Promoters and enhancers for LINC01169 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH15J066577 Promoter/Enhancer 1.7 EPDnew FANTOM5 Ensembl ENCODE 6.7 -2.2 -2211 5.6 POLR2G RBAK GTF2E2 AFF1 DNMT1 HES1 TOE1 MYC NFRKB TAF9B SMAD6 ZWILCH RPL4 SNORD16 SNORD18A SNAPC5 MAP2K1 LINC01169 TIPIN DIS3L
GH15J066674 Enhancer 1 FANTOM5 ENCODE dbSUPER 4.7 +91.6 91582 0.2 NRF1 RFX1 POLR2A GABPA POLR2G ZNF592 E2F6 EP400 TFDP1 SMAD5 LINC01169 MAP2K1 SMAD6 piR-61945-161
GH15J066586 Enhancer 0.6 Ensembl 5.2 +4.3 4311 0.6 ZNF263 POLR2A ZFHX2 SUPT5H FOXP2 ZBTB7A EGR1 SMARCA4 MAX HNRNPK LINC01169 lnc-LCTL-1
GH15J066591 Enhancer 0.6 Ensembl 5 +9.5 9511 1 MYC MXI1 ZNF316 ZKSCAN1 SUPT5H MAFK POLR2A MAX GATA2 ZNF362 LINC01169 TIPIN lnc-LCTL-1
GH15J066588 Enhancer 0.5 ENCODE 5 +6.5 6528 0.2 CTCF SMARCC1 YY1 POLR2A SMAD5 RAD21 E4F1 ZNF143 RBFOX2 CBX3 LINC01169 lnc-LCTL-1
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LINC01169 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LINC01169 Gene

Genomic Locations for LINC01169 Gene
chr15:66,582,190-66,685,798
(GRCh38/hg38)
Size:
103,609 bases
Orientation:
Plus strand

Genomic View for LINC01169 Gene

Genes around LINC01169 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LINC01169 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC01169 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINC01169 Gene

Proteins for LINC01169 Gene

Post-translational modifications for LINC01169 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC01169 Gene

Domains & Families for LINC01169 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LINC01169 Gene

Function for LINC01169 Gene

Phenotypes From GWAS Catalog for LINC01169 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC01169 Gene

Localization for LINC01169 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC01169 Gene

Pathways & Interactions for LINC01169 Gene

PathCards logo

SuperPathways for LINC01169 Gene

No Data Available
;

Gene Ontology (GO) - Biological Process for LINC01169 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for LINC01169 Gene

Drugs & Compounds for LINC01169 Gene

No Compound Related Data Available

Transcripts for LINC01169 Gene

mRNA/cDNA for LINC01169 Gene

3 RNACentral transcripts :
1 REFSEQ mRNAs :
2 NCBI additional mRNA sequence :
1 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
2 NONCODE transcripts :
3 LncBook transcripts :
3 LNCipedia transcripts :

Alternative Splicing Database (ASD) splice patterns (SP) for LINC01169 Gene

No ASD Table

Relevant External Links for LINC01169 Gene

GeneLoc Exon Structure for
LINC01169

Expression for LINC01169 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for LINC01169 Gene

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for LINC01169

genes like me logo Genes that share expression patterns with LINC01169: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC01169 Gene

Orthologs for LINC01169 Gene

Evolution for LINC01169 Gene

ENSEMBL:
Gene Tree for LINC01169 (if available)
TreeFam:
Gene Tree for LINC01169 (if available)

No data available for Orthologs for LINC01169 Gene

Paralogs for LINC01169 Gene

No data available for Paralogs for LINC01169 Gene

Variants for LINC01169 Gene

Additional dbSNP identifiers (rs#s) for LINC01169 Gene

Structural Variations from Database of Genomic Variants (DGV) for LINC01169 Gene

Variant ID Type Subtype PubMed ID
dgv456e199 CNV deletion 23128226
esv2660192 CNV deletion 23128226
esv2749793 CNV deletion 23290073
esv3227123 CNV deletion 24192839
esv3552592 CNV deletion 23714750
esv3581752 CNV loss 25503493
esv3636769 CNV loss 21293372
esv3636770 CNV loss 21293372
nsv1048469 CNV loss 25217958
nsv1070706 CNV deletion 25765185
nsv477868 CNV novel sequence insertion 20440878
nsv569794 CNV loss 21841781
nsv820917 CNV deletion 20802225
nsv827368 CNV gain 20364138
nsv827369 CNV loss 20364138
nsv94993 CNV deletion 16902084
nsv957968 CNV deletion 24416366

Additional Variant Information for LINC01169 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC01169

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP and Variation tolerance for LINC01169 Gene

Disorders for LINC01169 Gene

Additional Disease Information for LINC01169

No disorders were found for LINC01169 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LINC01169 Gene

Publications for LINC01169 Gene

  1. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3 54

Products for LINC01169 Gene

Sources for LINC01169 Gene