Aliases for LINC01168 Gene

Subcategory (RNA class) for LINC01168 Gene

lncRNA

Quality Score for this RNA gene is

14

Aliases for LINC01168 Gene

  • Long Intergenic Non-Protein Coding RNA 1168 2 3 5
  • LINC01168 2 170
  • NONHSAG007236 94

External Ids for LINC01168 Gene

Previous GeneCards Identifiers for LINC01168 Gene

  • GC10P134781

Summaries for LINC01168 Gene

GeneCards Summary for LINC01168 Gene

LINC01168 (Long Intergenic Non-Protein Coding RNA 1168) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for LINC01168 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LINC01168 Gene

Genomics for LINC01168 Gene

GeneHancer (GH) Regulatory Elements for LINC01168 Gene

Promoters and enhancers for LINC01168 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH10J132962 Promoter/Enhancer 1.3 Ensembl ENCODE CraniofacialAtlas 750.6 -0.3 -277 2 SP1 POLR2A PKNOX1 RFX1 SP2 RFX3 BMI1 ZBTB17 JUNB RFX5 LINC01167 LINC01168 LINC01166 ADGRA1 lnc-CFAP46-5
GH10J133008 Enhancer 1.1 ENCODE CraniofacialAtlas dbSUPER 24.2 +47.3 47265 2.2 ZNF785 POLR2A ZNF701 ELF1 L3MBTL2 MTA3 IKZF1 ZFX SP1 MAFK TUBGCP2 SCART1 ENSG00000235245 LINC01168 MTG1 lnc-CFAP46-3 piR-41245-046
GH10J133013 Enhancer 0.6 ENCODE dbSUPER 28 +51.2 51234 0.2 ELF1 ZNF680 IKZF1 CTCF lnc-ADGRA1-2 lnc-CFAP46-3 LINC01168
GH10J132987 Enhancer 0.7 ENCODE CraniofacialAtlas 22.6 +25.6 25555 1.4 ZBTB40 MAFK POLR2A NFE2 GABPA RCOR1 JUND LINC01168 piR-58557-011 LINC01166
GH10J133022 Enhancer 0.6 Ensembl ENCODE CraniofacialAtlas 23.8 +60.1 60071 1.3 NR2F2 LINC01168 ECHS1 lnc-ADGRA1-1 ADGRA1
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LINC01168 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LINC01168 Gene

Genomic Locations for LINC01168 Gene
chr10:132,962,478-132,983,000
(GRCh38/hg38)
Size:
20,523 bases
Orientation:
Plus strand
chr10:134,779,038-134,790,001
(GRCh37/hg19)
Size:
10,964 bases
Orientation:
Plus strand

Genomic View for LINC01168 Gene

Genes around LINC01168 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LINC01168 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC01168 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINC01168 Gene

Proteins for LINC01168 Gene

Post-translational modifications for LINC01168 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC01168 Gene

Domains & Families for LINC01168 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LINC01168 Gene

Function for LINC01168 Gene

Phenotypes From GWAS Catalog for LINC01168 Gene

Phenotypes for LINC01168 Gene

genes like me logo Genes that share phenotypes with LINC01168: view

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC01168 Gene

Localization for LINC01168 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC01168 Gene

Pathways & Interactions for LINC01168 Gene

PathCards logo

SuperPathways for LINC01168 Gene

No Data Available

Gene Ontology (GO) - Biological Process for LINC01168 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LINC01168 Gene

Drugs & Compounds for LINC01168 Gene

No Compound Related Data Available

Transcripts for LINC01168 Gene

mRNA/cDNA for LINC01168 Gene

(1) REFSEQ mRNAs :
(1) Additional mRNA sequences :
(3) Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
(5) RNACentral transcripts :
(3) NONCODE transcripts :
(4) LNCipedia transcripts :

Alternative Splicing Database (ASD) splice patterns (SP) for LINC01168 Gene

No ASD Table

Relevant External Links for LINC01168 Gene

GeneLoc Exon Structure for
LINC01168
ECgene alternative splicing isoforms for
LINC01168

Expression for LINC01168 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for LINC01168 Gene

mRNA differential expression in normal tissues according to GTEx for LINC01168 Gene

This gene is overexpressed in Brain - Cortex (x10.4), Testis (x9.5), Brain - Frontal Cortex (BA9) (x8.8), and Brain - Anterior cingulate cortex (BA24) (x5.2).

NURSA nuclear receptor signaling pathways regulating expression of LINC01168 Gene:

LINC01168
genes like me logo Genes that share expression patterns with LINC01168: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC01168 Gene

Orthologs for LINC01168 Gene

Evolution for LINC01168 Gene

ENSEMBL:
Gene Tree for LINC01168 (if available)
TreeFam:
Gene Tree for LINC01168 (if available)

No data available for Orthologs for LINC01168 Gene

Paralogs for LINC01168 Gene

No data available for Paralogs for LINC01168 Gene

Variants for LINC01168 Gene

Sequence variations from dbSNP and Humsavar for LINC01168 Gene

SNP ID Clin Chr 10 pos Variation AA Info Type
rs1000090256 -- 132,974,039(+) G/A non_coding_transcript_variant
rs1000775749 -- 132,965,067(+) T/C upstream_transcript_variant
rs1000786859 -- 132,964,925(+) C/T upstream_transcript_variant
rs1000961590 -- 132,969,897(+) C/T intron_variant
rs1001003271 -- 132,975,113(+) G/A intron_variant

Structural Variations from Database of Genomic Variants (DGV) for LINC01168 Gene

Variant ID Type Subtype PubMed ID
dgv1463n54 CNV gain 21841781
dgv1464n54 CNV gain 21841781
dgv995n100 CNV gain 25217958
dgv996n100 CNV gain 25217958
dgv997n100 CNV gain 25217958
esv2676253 CNV deletion 23128226
esv2759792 CNV gain 17122850
esv3577905 CNV gain 25503493
esv3625015 CNV gain 21293372
esv3625018 CNV gain 21293372
esv3625020 CNV gain 21293372
esv3891900 CNV gain 25118596
esv988813 CNV insertion 20482838
esv993361 CNV loss 20482838
nsv1042708 CNV gain 25217958
nsv1054934 CNV gain 25217958
nsv467498 CNV gain 19166990
nsv467499 CNV gain 19166990
nsv520220 CNV gain 19592680
nsv528260 CNV loss 19592680
nsv552526 CNV gain 21841781
nsv552538 CNV gain 21841781
nsv818788 CNV gain 17921354
nsv825668 CNV gain 20364138
nsv832035 CNV loss 17160897

Additional Variant Information for LINC01168 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC01168

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for LINC01168 Gene

Disorders for LINC01168 Gene

Additional Disease Information for LINC01168

No disorders were found for LINC01168 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LINC01168 Gene

Publications for LINC01168 Gene

No publications were found for LINC01168 Gene.

Products for LINC01168 Gene

Sources for LINC01168 Gene