Aliases for LINC01167 Gene

Subcategory (RNA class) for LINC01167 Gene

lncRNA

Quality Score for this RNA gene is

15

Aliases for LINC01167 Gene

  • Long Intergenic Non-Protein Coding RNA 1167 2 3 5
  • LINC01167 2 170
  • TCONS_00018075 3
  • NONHSAG007235 94
  • HSALNG0081842 169

External Ids for LINC01167 Gene

Previous GeneCards Identifiers for LINC01167 Gene

  • GC00U934506

Summaries for LINC01167 Gene

GeneCards Summary for LINC01167 Gene

LINC01167 (Long Intergenic Non-Protein Coding RNA 1167) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for LINC01167 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LINC01167 Gene

Genomics for LINC01167 Gene

GeneHancer (GH) Regulatory Elements for LINC01167 Gene

Promoters and enhancers for LINC01167 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH10J132962 Promoter/Enhancer 1.3 Ensembl ENCODE CraniofacialAtlas 750.6 +0.0 36 2 SP1 POLR2A PKNOX1 RFX1 SP2 RFX3 BMI1 ZBTB17 JUNB RFX5 LINC01167 LINC01168 LINC01166 ADGRA1 lnc-CFAP46-5
GH10J132960 Enhancer 0.2 Ensembl 750.6 +1.9 1936 0.2 LINC01167 LINC01166 lnc-CFAP46-5
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LINC01167 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LINC01167 Gene

Genomic Locations for LINC01167 Gene
chr10:132,961,340-132,962,237
(GRCh38/hg38)
Size:
898 bases
Orientation:
Minus strand

Genomic View for LINC01167 Gene

Genes around LINC01167 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LINC01167 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC01167 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINC01167 Gene

Proteins for LINC01167 Gene

Post-translational modifications for LINC01167 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC01167 Gene

Domains & Families for LINC01167 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LINC01167 Gene

Function for LINC01167 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC01167 Gene

Localization for LINC01167 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC01167 Gene

Pathways & Interactions for LINC01167 Gene

PathCards logo

SuperPathways for LINC01167 Gene

No Data Available

Gene Ontology (GO) - Biological Process for LINC01167 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LINC01167 Gene

Drugs & Compounds for LINC01167 Gene

No Compound Related Data Available

Transcripts for LINC01167 Gene

mRNA/cDNA for LINC01167 Gene

(1) REFSEQ mRNAs :
(1) Additional mRNA sequences :
(1) Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
(2) RNACentral transcripts :
(1) LNCipedia transcripts :
(1) NONCODE transcripts :
(1) LncBook transcripts :

Alternative Splicing Database (ASD) splice patterns (SP) for LINC01167 Gene

No ASD Table

Relevant External Links for LINC01167 Gene

GeneLoc Exon Structure for
LINC01167
ECgene alternative splicing isoforms for
LINC01167

Expression for LINC01167 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for LINC01167 Gene

NURSA nuclear receptor signaling pathways regulating expression of LINC01167 Gene:

LINC01167
genes like me logo Genes that share expression patterns with LINC01167: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC01167 Gene

Orthologs for LINC01167 Gene

Evolution for LINC01167 Gene

ENSEMBL:
Gene Tree for LINC01167 (if available)
TreeFam:
Gene Tree for LINC01167 (if available)

No data available for Orthologs for LINC01167 Gene

Paralogs for LINC01167 Gene

No data available for Paralogs for LINC01167 Gene

Variants for LINC01167 Gene

Sequence variations from dbSNP and Humsavar for LINC01167 Gene

SNP ID Clin Chr 10 pos Variation AA Info Type
rs1003146674 -- 132,961,973(-) A/G non_coding_transcript_variant
rs1003436390 -- 132,961,779(-) C/T non_coding_transcript_variant
rs1003743550 -- 132,963,368(-) C/T upstream_transcript_variant
rs1004927109 -- 132,961,445(-) G/A non_coding_transcript_variant
rs1006448193 -- 132,961,823(-) C/T non_coding_transcript_variant

Structural Variations from Database of Genomic Variants (DGV) for LINC01167 Gene

Variant ID Type Subtype PubMed ID
dgv1463n54 CNV gain 21841781
dgv1464n54 CNV gain 21841781
dgv995n100 CNV gain 25217958
dgv996n100 CNV gain 25217958
dgv997n100 CNV gain 25217958
esv2759792 CNV gain 17122850
esv3577905 CNV gain 25503493
esv3625015 CNV gain 21293372
esv3625018 CNV gain 21293372
esv3625019 CNV gain 21293372
esv3891900 CNV gain 25118596
nsv1042708 CNV gain 25217958
nsv1054934 CNV gain 25217958
nsv467498 CNV gain 19166990
nsv467499 CNV gain 19166990
nsv470978 CNV loss 18288195
nsv528260 CNV loss 19592680
nsv552526 CNV gain 21841781
nsv552538 CNV gain 21841781
nsv818788 CNV gain 17921354
nsv832035 CNV loss 17160897
nsv952702 CNV deletion 24416366

Additional Variant Information for LINC01167 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC01167

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for LINC01167 Gene

Disorders for LINC01167 Gene

Additional Disease Information for LINC01167

No disorders were found for LINC01167 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LINC01167 Gene

Publications for LINC01167 Gene

No publications were found for LINC01167 Gene.

No data available for External Links for LINC01167 Gene

Products for LINC01167 Gene

Sources for LINC01167 Gene