Aliases for LINC01166 Gene

Subcategory (RNA class) for LINC01166 Gene

lncRNA

Number of RNA Genes sources:

3 / 14

Aliases for LINC01166 Gene

  • Long Intergenic Non-Protein Coding RNA 1166 2 3 5
  • LINC01166 2 168
  • NONHSAG007233 92
  • HSALNG0081842 167

External Ids for LINC01166 Gene

Previous GeneCards Identifiers for LINC01166 Gene

  • GC10M134760

Summaries for LINC01166 Gene

GeneCards Summary for LINC01166 Gene

LINC01166 (Long Intergenic Non-Protein Coding RNA 1166) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for LINC01166 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LINC01166 Gene

Genomics for LINC01166 Gene

GeneHancer (GH) Regulatory Elements for LINC01166 Gene

Promoters and enhancers for LINC01166 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH10J132964 Promoter/Enhancer 1.2 Ensembl ENCODE 512.8 +0.4 426 1.8 ZNF217 ZNF639 ZNF10 ZBTB10 ZBTB11 ZNF623 TRIM28 KLF7 ATF2 GABPA LINC01166 SCART1 ENSG00000235245 TUBGCP2 ADGRA1 LINC01168
GH10J132942 Promoter/Enhancer 1.7 EPDnew Ensembl ENCODE CraniofacialAtlas 14.2 +22.9 22927 1.6 EP300 RFX1 HDAC2 MXI1 SIN3A HCFC1 MYC ZBTB17 CTCF SAP130 CFAP46 LOC105378572 lnc-ADGRA1-4 LINC01166 lnc-NKX6-2-5
GH10J132962 Promoter/Enhancer 1.4 Ensembl ENCODE CraniofacialAtlas 13.4 +3.3 3326 2 RFX1 POLR2A SP2 ZBTB17 YY1 PBX2 ELF1 BATF POU2F2 PKNOX1 LINC01167 LINC01168 LINC01166 ADGRA1 lnc-CFAP46-5
GH10J132930 Enhancer 0.7 Ensembl ENCODE 9.5 +34.4 34370 3.9 ZIC2 RELA WT1 ZFHX2 GLIS1 ATF2 ZFX EGR2 ATF7 EED lnc-NKX6-2-5 ADGRA1 LINC01166 CFAP46 piR-61662
GH10J132913 Enhancer 0.7 Ensembl ENCODE 8.6 +52.0 52026 0.6 TEAD4 TCF12 KLF1 TAF1 ZBTB33 RBBP5 MAX LINC01166 lnc-NKX6-2-5 piR-61662 CFAP46
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LINC01166 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LINC01166 Gene

Genomic Locations for LINC01166 Gene
chr10:132,943,967-132,965,527
(GRCh38/hg38)
Size:
21,561 bases
Orientation:
Minus strand
chr10:134,757,471-134,778,793
(GRCh37/hg19)
Size:
21,323 bases
Orientation:
Minus strand

Genomic View for LINC01166 Gene

Genes around LINC01166 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LINC01166 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC01166 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINC01166 Gene

Proteins for LINC01166 Gene

Post-translational modifications for LINC01166 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC01166 Gene

Domains & Families for LINC01166 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LINC01166 Gene

Function for LINC01166 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC01166 Gene

Localization for LINC01166 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC01166 Gene

Pathways & Interactions for LINC01166 Gene

PathCards logo

SuperPathways for LINC01166 Gene

No Data Available
;

Gene Ontology (GO) - Biological Process for LINC01166 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for LINC01166 Gene

Drugs & Compounds for LINC01166 Gene

No Compound Related Data Available

Transcripts for LINC01166 Gene

mRNA/cDNA for LINC01166 Gene

5 RNACentral transcripts :
2 REFSEQ mRNAs :
4 NCBI additional mRNA sequence :
1 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
5 NONCODE transcripts :
5 LncBook transcripts :
5 LNCipedia transcripts :

Alternative Splicing Database (ASD) splice patterns (SP) for LINC01166 Gene

No ASD Table

Relevant External Links for LINC01166 Gene

GeneLoc Exon Structure for
LINC01166

Expression for LINC01166 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for LINC01166 Gene

mRNA differential expression in normal tissues according to GTEx for LINC01166 Gene

This gene is overexpressed in Brain - Hypothalamus (x7.5), Testis (x4.4), and Brain - Cortex (x4.4).

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for LINC01166

genes like me logo Genes that share expression patterns with LINC01166: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC01166 Gene

Orthologs for LINC01166 Gene

Evolution for LINC01166 Gene

ENSEMBL:
Gene Tree for LINC01166 (if available)
TreeFam:
Gene Tree for LINC01166 (if available)

No data available for Orthologs for LINC01166 Gene

Paralogs for LINC01166 Gene

No data available for Paralogs for LINC01166 Gene

Variants for LINC01166 Gene

Additional dbSNP identifiers (rs#s) for LINC01166 Gene

Structural Variations from Database of Genomic Variants (DGV) for LINC01166 Gene

Variant ID Type Subtype PubMed ID
dgv1463n54 CNV gain 21841781
dgv1464n54 CNV gain 21841781
dgv995n100 CNV gain 25217958
dgv996n100 CNV gain 25217958
dgv997n100 CNV gain 25217958
esv2186698 CNV deletion 18987734
esv2676253 CNV deletion 23128226
esv2743781 CNV deletion 23290073
esv2759792 CNV gain 17122850
esv3577905 CNV gain 25503493
esv3625015 CNV gain 21293372
esv3625017 CNV gain 21293372
esv3625018 CNV gain 21293372
esv3625019 CNV gain 21293372
esv3891900 CNV gain 25118596
nsv1042708 CNV gain 25217958
nsv1054934 CNV gain 25217958
nsv467498 CNV gain 19166990
nsv467499 CNV gain 19166990
nsv470978 CNV loss 18288195
nsv528260 CNV loss 19592680
nsv552526 CNV gain 21841781
nsv552538 CNV gain 21841781
nsv818788 CNV gain 17921354
nsv832035 CNV loss 17160897
nsv952702 CNV deletion 24416366

Additional Variant Information for LINC01166 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC01166

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP and Variation tolerance for LINC01166 Gene

Disorders for LINC01166 Gene

Additional Disease Information for LINC01166

No disorders were found for LINC01166 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LINC01166 Gene

Publications for LINC01166 Gene

  1. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K … Sugano S (Genome research 2006) 3 54
  2. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3 54

Products for LINC01166 Gene

Sources for LINC01166 Gene