LINC01160 Gene (RNA Gene)

Long Intergenic Non-Protein Coding RNA 1160

GC01M111599
GIFtS:
12
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Aliases for LINC01160 Gene

Subcategory (RNA class) for LINC01160 Gene

lncRNA

Number of RNA Genes sources:

3 / 17

Aliases for LINC01160 Gene

  • Long Intergenic Non-Protein Coding RNA 1160 2 3 5
  • LINC01160 2 5 165
  • NONHSAG002414.2 91
  • HSALNG0006063 164

External Ids for LINC01160 Gene

Previous GeneCards Identifiers for LINC01160 Gene

  • GC01M112143

Summaries for LINC01160 Gene

GeneCards Summary for LINC01160 Gene

LINC01160 (Long Intergenic Non-Protein Coding RNA 1160) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for LINC01160 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LINC01160 Gene

Genomics for LINC01160 Gene

GeneHancer (GH) Regulatory Elements Pubs

Download GeneHancer 2017 data
Promoters and enhancers for LINC01160 Gene
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LINC01160 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for LINC01160 Gene

Genomic Locations for LINC01160 Gene
chr1:111,599,007-111,608,723
(GRCh38/hg38)
Size:
9,717 bases
Orientation:
Minus strand
chr1:112,141,629-112,151,345
(GRCh37/hg19)
Size:
9,717 bases
Orientation:
Minus strand

Genomic View for LINC01160 Gene

Genes around LINC01160 on UCSC Golden Path with GeneCards custom track
LINC01160 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Cytogenetic band:
LINC01160 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC01160 Gene
GeneLoc Logo Genomic Neighborhood • Exon Structure • Gene Density

RefSeq DNA sequence for LINC01160 Gene

Proteins for LINC01160 Gene

Products:

  1. Antibody
  2. Protein
  3. Assay

Post-translational modifications for LINC01160 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC01160 Gene

Domains & Families for LINC01160 Gene

Gene Families for LINC01160 Gene

HGNC:
genes like me logo Genes that share domains with LINC01160: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LINC01160 Gene

Function for LINC01160 Gene

Products:

  1. Animal Model
  2. CRISPR
  3. miRNA
  4. Inhibitory RNA
  5. Clone
  6. Cell Line

Phenotypes From GWAS Catalog for LINC01160 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC01160 Gene

Localization for LINC01160 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC01160 Gene

Pathways & Interactions for LINC01160 Gene

PathCards logo

SuperPathways for LINC01160 Gene

No Data Available

Gene Ontology (GO) - Biological Process for LINC01160 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for LINC01160 Gene

Drugs & Compounds for LINC01160 Gene

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  1. Drug
No Compound Related Data Available

Transcripts for LINC01160 Gene

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  1. CRISPR
  2. miRNA
  3. Inhibitory RNA
  4. Clone

Non-coding RNA (ncRNA) Transcripts from RNAcentral for LINC01160 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS000075F019_9606 lncRNA 1542 5

HGNC: 49525,

RefSeq: NR_034126,

LncBook: HSALNT0012671,

LNCipedia: LINC01160:4,

NONCODE: NONHSAT005194.2,

URS00005F0882_9606 lncRNA 706 4

Ensembl: ENST00000453988 (view in UCSC) ,

LncBook: HSALNT0012673,

LNCipedia: LINC01160:1,

NONCODE: NONHSAT005195.2,

URS000038960C_9606 lncRNA 894 3

Ensembl: ENST00000450155 (view in UCSC) ,

LncBook: HSALNT0012672,

LNCipedia: LINC01160:3,

URS000005E0D6_9606 lncRNA 768 2

Ensembl: ENST00000441004 (view in UCSC) ,

LNCipedia: LINC01160:2,

LINC01160 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for LINC01160 Gene

3 NCBI additional mRNA sequence :

Alternative Splicing Database (ASD) splice patterns (SP) for LINC01160 Gene

No ASD Table

Relevant External Links for LINC01160 Gene

GeneLoc Exon Structure for
LINC01160

Expression for LINC01160 Gene

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  1. Primer
  2. Gene Expression Assay

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for LINC01160 Gene

mRNA expression in normal human tissues for LINC01160 Gene
mRNA expression by GTEx for LINC01160 Gene

mRNA differential expression in normal tissues according to GTEx for LINC01160 Gene

This gene is overexpressed in Esophagus - Muscularis (x5.7), Esophagus - Gastroesophageal Junction (x5.5), and Colon - Sigmoid (x5.1).

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for LINC01160

genes like me logo Genes that share expression patterns with LINC01160: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC01160 Gene

Orthologs for LINC01160 Gene

Evolution for LINC01160 Gene

ENSEMBL:
Gene Tree for LINC01160 (if available)
TreeFam:
Gene Tree for LINC01160 (if available)

No data available for Orthologs for LINC01160 Gene

Paralogs for LINC01160 Gene

No data available for Paralogs for LINC01160 Gene

Variants for LINC01160 Gene

Products:

  1. SNP Genotyping and Copy Number Assay

Additional dbSNP identifiers (rs#s) for LINC01160 Gene

Structural Variations from Database of Genomic Variants (DGV) for LINC01160 Gene

Variant ID Type Subtype PubMed ID
nsv947444 CNV duplication 23825009

Additional Variant Information for LINC01160 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC01160

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP and Variation tolerance for LINC01160 Gene

Disorders for LINC01160 Gene

Additional Disease Information for LINC01160

ATLAS of Genetics and Cytogenetics in Oncology and Haematology

No disorders were found for LINC01160 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LINC01160 Gene

Publications for LINC01160 Gene

  1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3

ExternalLinks

View latest publications for LINC01160 gene in Mastermind

Products for LINC01160 Gene

Sources for LINC01160 Gene