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LINC01160 Gene(RNA Gene)

Long Intergenic Non-Protein Coding RNA 1160

GCID:
GC01M111599
GIFtS:
13
Genes Participants
UDN Logo

Aliases for LINC01160 Gene

Subcategory (RNA class) for LINC01160 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for LINC01160 Gene

  • Long Intergenic Non-Protein Coding RNA 1160 2 3 5

External Ids for LINC01160 Gene

Previous GeneCards Identifiers for LINC01160 Gene

  • GC01M112143

Summaries for LINC01160 Gene

GeneCards Summary for LINC01160 Gene

LINC01160 (Long Intergenic Non-Protein Coding RNA 1160) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for LINC01160 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LINC01160 Gene

Genomics for LINC01160 Gene

Products:

  1. Regulatory Element

GeneHancer (GH) Regulatory Elements for LINC01160 Gene

Promoters and enhancers for LINC01160 Gene
GeneHancer (GH) Identifier GH Type GH
Score		 GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites		 Gene Targets
GH01I111610 Enhancer 0.6 ENCODE dbSUPER 550.8 -1.9 -1894 1.2 ZNF664 ZSCAN4 BRF2 LINC01160 RNU6-151P KRT18P57 GC01P111550 RAP1A
GH01I111618 Promoter/Enhancer 2.5 EPDnew FANTOM5 Ensembl ENCODE dbSUPER 4.9 -11.9 -11888 4.6 HDGF PKNOX1 ARNT ARID4B SIN3A YY1 SLC30A9 POLR2B ZNF766 ZNF213 RAP1A KRT18P57 RNU6-151P ATP5PB WDR77 FAM212B UBE2FP3 LINC01160 PIFO C1orf162
GH01I111601 Enhancer 1.2 Ensembl ENCODE dbSUPER 6.9 +5.0 5000 4.6 HDGF PKNOX1 SMAD1 RB1 BATF IRF4 ATF7 ETV6 BCLAF1 IKZF2 FAM212B RAP1A KRT18P57 RNU6-151P DDX20 C1orf162 LINC01160 PIFO TMIGD3 GC01P111550
GH01I111718 Enhancer 1.1 Ensembl ENCODE dbSUPER 4.5 -111.8 -111781 3.4 KLF1 SAP130 ZSCAN4 SALL2 CEBPG POLR2A ZBTB48 SCRT2 ZBTB20 GATAD2A RAP1A DDX20 FAM212B ENSG00000273483 OVGP1 FAM212B-AS1 LINC01160 GC01M111722 GC01P111714
GH01I111667 Enhancer 0.7 dbSUPER 5.6 -61.0 -60972 3.7 HDAC1 ATF1 FOXA2 TAL1 TCF12 ZNF316 FOXK2 NCOR1 CBFA2T2 NFE2 RAP1A LINC01160 UBE2FP3 RNU6-151P GC01P111714 GC01P111550
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around LINC01160 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LINC01160 Gene

Genomic Locations for LINC01160 Gene
chr1:111,599,007-111,608,723
(GRCh38/hg38)
Size:
9,717 bases
Orientation:
Minus strand
chr1:112,141,629-112,151,345
(GRCh37/hg19)

Genomic View for LINC01160 Gene

Genes around LINC01160 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LINC01160 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC01160 Gene
GeneLoc Logo Genomic Neighborhood • Exon Structure • Gene Density

RefSeq DNA sequence for LINC01160 Gene

Proteins for LINC01160 Gene

Products:

  1. Antibody
  2. Protein
  3. Assay

Post-translational modifications for LINC01160 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC01160 Gene

Domains & Families for LINC01160 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LINC01160 Gene

Function for LINC01160 Gene

Products:

  1. Animal Model
  2. CRISPR
  3. miRNA
  4. Inhibitory RNA
  5. Clone
  6. Cell Line

Phenotypes From GWAS Catalog for LINC01160 Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC01160 Gene

Localization for LINC01160 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC01160 Gene

Pathways & Interactions for LINC01160 Gene

SuperPathways for LINC01160 Gene

PathCards logo More details on SuperPathways for LINC01160
No Data Available

Interacting Proteins for LINC01160 Gene

Gene Ontology (GO) - Biological Process for LINC01160 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LINC01160 Gene

Drugs & Compounds for LINC01160 Gene

Products:

  1. Drug
No Compound Related Data Available

Transcripts for LINC01160 Gene

Products:

  1. CRISPR
  2. miRNA
  3. Inhibitory RNA
  4. Clone

mRNA/cDNA for LINC01160 Gene

(3) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for LINC01160 Gene

No ASD Table

Relevant External Links for LINC01160 Gene

GeneLoc Exon Structure for
LINC01160
ECgene alternative splicing isoforms for
LINC01160

Expression for LINC01160 Gene

Products:

  1. Primer
  2. Gene Expression Assay

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for LINC01160 Gene

mRNA expression in normal human tissues for LINC01160 Gene
mRNA expression by GTEx for LINC01160 Gene

mRNA differential expression in normal tissues according to GTEx for LINC01160 Gene

This gene is overexpressed in Esophagus - Muscularis (x5.7), Esophagus - Gastroesophageal Junction (x5.5), and Colon - Sigmoid (x5.1).

NURSA nuclear receptor signaling pathways regulating expression of LINC01160 Gene:

LINC01160
genes like me logo Genes that share expression patterns with LINC01160: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC01160 Gene

Orthologs for LINC01160 Gene

Evolution for LINC01160 Gene

ENSEMBL:
Gene Tree for LINC01160 (if available)
TreeFam:
Gene Tree for LINC01160 (if available)

No data available for Orthologs for LINC01160 Gene

Paralogs for LINC01160 Gene

No data available for Paralogs for LINC01160 Gene

Variants for LINC01160 Gene

Products:

  1. SNP Genotyping and Copy Number Assay

Sequence variations from dbSNP and Humsavar for LINC01160 Gene

SNP ID Clin Chr 01 pos Variation AA Info Type
rs1000620093 -- 111,606,745(-) G/C intron_variant
rs1000756727 -- 111,599,612(-) C/T non_coding_transcript_variant
rs1000848136 -- 111,606,097(-) G/A intron_variant
rs1001043388 -- 111,598,788(-) T/C downstream_transcript_variant
rs1001151377 -- 111,606,434(-) G/A intron_variant

Structural Variations from Database of Genomic Variants (DGV) for LINC01160 Gene

Variant ID Type Subtype PubMed ID
nsv947444 CNV duplication 23825009

Additional Variant Information for LINC01160 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC01160

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for LINC01160 Gene

Disorders for LINC01160 Gene

Additional Disease Information for LINC01160

ATLAS of Genetics and Cytogenetics in Oncology and Haematology

No disorders were found for LINC01160 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LINC01160 Gene

Publications for LINC01160 Gene

  1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3 58

Products for LINC01160 Gene

Sources for LINC01160 Gene

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