Aliases for LINC01159 Gene

Subcategory (RNA class) for LINC01159 Gene

lncRNA

Number of RNA Genes sources:

3 / 14

Aliases for LINC01159 Gene

  • Long Intergenic Non-Protein Coding RNA 1159 2 3 5
  • LINC01159 2 168
  • HSALNG0017545 167
  • NONHSAG028810 92
  • Linc-Brn1b 3

External Ids for LINC01159 Gene

Previous GeneCards Identifiers for LINC01159 Gene

  • GC02M105484

Summaries for LINC01159 Gene

GeneCards Summary for LINC01159 Gene

LINC01159 (Long Intergenic Non-Protein Coding RNA 1159) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for LINC01159 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LINC01159 Gene

Genomics for LINC01159 Gene

GeneHancer (GH) Regulatory Elements for LINC01159 Gene

Promoters and enhancers for LINC01159 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH02J104871 Promoter/Enhancer 1.8 FANTOM5 Ensembl ENCODE CraniofacialAtlas dbSUPER 500.7 +1.8 1782 2.2 CTCF PHF8 ZFX ZIC2 ZBTB10 ZBTB26 SAP30 RAD21 ATF2 SMC3 LINC01159 POU3F3 MRPS9 GPR45 ENSG00000269707 lnc-POU3F3-4
GH02J104875 Enhancer 0.3 Ensembl dbSUPER 500.7 0.0 -18 0.2 LINC01159 RF00017-3291 ENSG00000269707
GH02J104874 Enhancer 0.3 Ensembl dbSUPER 500.7 -0.8 -818 0.2 LINC01159 RF00017-3291 ENSG00000269707
GH02J104867 Enhancer 0.8 ENCODE dbSUPER 0.4 +12.0 12005 0.2 ZBTB26 HDAC2 EZH2 SP2 MXI1 TCF12 ZNF335 SUZ12 SIN3A RNF2 lnc-POU3F3-4 ENSG00000269707 LINC01159
GH02J104858 Enhancer 0.8 UCNEbase dbSUPER 0.4 +16.0 16037 0.3 CBX8 BMI1 CBX2 HLF SUZ12 EZH2 lnc-POU3F3-4 POU3F3 ENSG00000269707 LINC01159
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LINC01159 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LINC01159 Gene

Genomic Locations for LINC01159 Gene
chr2:104,860,423-104,874,483
(GRCh38/hg38)
Size:
14,061 bases
Orientation:
Minus strand
chr2:105,481,955-105,489,053
(GRCh37/hg19)
Size:
7,099 bases
Orientation:
Minus strand

Genomic View for LINC01159 Gene

Genes around LINC01159 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LINC01159 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC01159 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINC01159 Gene

Proteins for LINC01159 Gene

Post-translational modifications for LINC01159 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC01159 Gene

Domains & Families for LINC01159 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LINC01159 Gene

Function for LINC01159 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC01159 Gene

Localization for LINC01159 Gene

Subcellular locations from

COMPARTMENTS
Extracellular space Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi Apparatus Nucleus Mitochondrion 0 1 2 3 4 5 Confidence
COMPARTMENTS Subcellular localization image for LINC01159 gene
Compartment Confidence
nucleus 1

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC01159 Gene

Pathways & Interactions for LINC01159 Gene

PathCards logo

SuperPathways for LINC01159 Gene

No Data Available
;

Gene Ontology (GO) - Biological Process for LINC01159 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for LINC01159 Gene

Drugs & Compounds for LINC01159 Gene

No Compound Related Data Available

Transcripts for LINC01159 Gene

mRNA/cDNA for LINC01159 Gene

19 RNACentral transcripts :
2 REFSEQ mRNAs :
2 NCBI additional mRNA sequence :
5 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
5 NONCODE transcripts :
2 LncBook transcripts :
16 LNCipedia transcripts :

Alternative Splicing Database (ASD) splice patterns (SP) for LINC01159 Gene

No ASD Table

Relevant External Links for LINC01159 Gene

GeneLoc Exon Structure for
LINC01159

Expression for LINC01159 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for LINC01159 Gene

mRNA differential expression in normal tissues according to GTEx for LINC01159 Gene

This gene is overexpressed in Kidney - Cortex (x14.6).

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for LINC01159

genes like me logo Genes that share expression patterns with LINC01159: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC01159 Gene

Orthologs for LINC01159 Gene

Evolution for LINC01159 Gene

ENSEMBL:
Gene Tree for LINC01159 (if available)
TreeFam:
Gene Tree for LINC01159 (if available)

No data available for Orthologs for LINC01159 Gene

Paralogs for LINC01159 Gene

No data available for Paralogs for LINC01159 Gene

Variants for LINC01159 Gene

Additional dbSNP identifiers (rs#s) for LINC01159 Gene

Structural Variations from Database of Genomic Variants (DGV) for LINC01159 Gene

Variant ID Type Subtype PubMed ID
dgv658n67 CNV gain 20364138
nsv829586 CNV gain 20364138
nsv829587 CNV loss 20364138
nsv829589 CNV gain 20364138

Additional Variant Information for LINC01159 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC01159

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP and Variation tolerance for LINC01159 Gene

Disorders for LINC01159 Gene

Additional Disease Information for LINC01159

No disorders were found for LINC01159 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LINC01159 Gene

Publications for LINC01159 Gene

  1. Multiple knockout mouse models reveal lincRNAs are required for life and brain development. (PMID: 24381249) Sauvageau M … Rinn JL (eLife 2013) 2 3 54
  2. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3 54

Products for LINC01159 Gene

Sources for LINC01159 Gene