Aliases for LINC01153 Gene

Subcategory (RNA class) for LINC01153 Gene

lncRNA

Number of RNA Genes sources:

3 / 14

Aliases for LINC01153 Gene

  • Long Intergenic Non-Protein Coding RNA 1153 2 3 5
  • LINC01153 2 168
  • NONHSAG007047 92
  • HSALNG0081139 167

External Ids for LINC01153 Gene

Previous GeneCards Identifiers for LINC01153 Gene

  • GC10P122939

Summaries for LINC01153 Gene

GeneCards Summary for LINC01153 Gene

LINC01153 (Long Intergenic Non-Protein Coding RNA 1153) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for LINC01153 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LINC01153 Gene

Genomics for LINC01153 Gene

GeneHancer (GH) Regulatory Elements for LINC01153 Gene

Promoters and enhancers for LINC01153 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH10J121187 Enhancer 0.9 Ensembl ENCODE 0.4 +10.5 10519 2.7 ZSCAN5C ZNF10 ZIC2 TRIM28 OSR2 CTCF ZBTB17 TCF7L2 CEBPG PBX2 LINC01153 LOC105378523 lnc-FGFR2-2
GH10J121173 Enhancer 0.4 Ensembl 0.4 -5.6 -5588 0.2 GATA3 PKNOX1 SCRT2 lnc-WDR11-6 LINC01153 lnc-FGFR2-2
GH10J121244 Enhancer 0.8 Ensembl ENCODE 0.2 +67.0 67039 1.9 ZNF217 CLOCK CTBP1 MBD2 GATA3 FOXA1 PKNOX1 DPF2 RCOR1 NFIB LINC01153 LOC105378523 lnc-FGFR2-2
GH10J121183 Enhancer 0.3 Ensembl 0.4 +5.2 5212 0.2 POLR2A SMARCA4 LINC01153 LOC105378523 lnc-FGFR2-2
GH10J121307 Enhancer 1.3 Ensembl ENCODE CraniofacialAtlas 0.1 +130.8 130815 3.8 ZSCAN5C USF1 ZNF639 ZNF10 ZNF354C ZIC2 ZBTB10 ZNF423 ZNF510 TRIM28 WDR11 NSMCE4A ATE1 LOC105378523 LINC01153 lnc-FGFR2-2
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LINC01153 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LINC01153 Gene

Genomic Locations for LINC01153 Gene
chr10:121,178,289-121,185,966
(GRCh38/hg38)
Size:
7,678 bases
Orientation:
Plus strand
chr10:122,938,214-122,945,480
(GRCh37/hg19)
Size:
7,267 bases
Orientation:
Plus strand

Genomic View for LINC01153 Gene

Genes around LINC01153 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LINC01153 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC01153 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINC01153 Gene

Proteins for LINC01153 Gene

Post-translational modifications for LINC01153 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC01153 Gene

Domains & Families for LINC01153 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LINC01153 Gene

Function for LINC01153 Gene

Phenotypes From GWAS Catalog for LINC01153 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC01153 Gene

Localization for LINC01153 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC01153 Gene

Pathways & Interactions for LINC01153 Gene

PathCards logo

SuperPathways for LINC01153 Gene

No Data Available
;

Gene Ontology (GO) - Biological Process for LINC01153 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for LINC01153 Gene

Drugs & Compounds for LINC01153 Gene

No Compound Related Data Available

Transcripts for LINC01153 Gene

mRNA/cDNA for LINC01153 Gene

1 RNACentral transcripts :
1 NCBI additional mRNA sequence :
1 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
1 NONCODE transcripts :
1 LncBook transcripts :
1 LNCipedia transcripts :

Alternative Splicing Database (ASD) splice patterns (SP) for LINC01153 Gene

No ASD Table

Relevant External Links for LINC01153 Gene

GeneLoc Exon Structure for
LINC01153

Expression for LINC01153 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for LINC01153 Gene

mRNA differential expression in normal tissues according to GTEx for LINC01153 Gene

This gene is overexpressed in Testis (x21.6), Brain - Spinal cord (cervical c-1) (x10.9), Brain - Putamen (basal ganglia) (x4.7), Brain - Amygdala (x4.5), and Brain - Substantia nigra (x4.2).

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for LINC01153

genes like me logo Genes that share expression patterns with LINC01153: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC01153 Gene

Orthologs for LINC01153 Gene

Evolution for LINC01153 Gene

ENSEMBL:
Gene Tree for LINC01153 (if available)
TreeFam:
Gene Tree for LINC01153 (if available)

No data available for Orthologs for LINC01153 Gene

Paralogs for LINC01153 Gene

No data available for Paralogs for LINC01153 Gene

Variants for LINC01153 Gene

Additional dbSNP identifiers (rs#s) for LINC01153 Gene

Additional Variant Information for LINC01153 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC01153

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for LINC01153 Gene

Disorders for LINC01153 Gene

Additional Disease Information for LINC01153

No disorders were found for LINC01153 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LINC01153 Gene

Publications for LINC01153 Gene

  1. A meta-analysis of genome-wide association studies for adiponectin levels in East Asians identifies a novel locus near WDR11-FGFR2. (PMID: 24105470) Wu Y … Tai ES (Human molecular genetics 2014) 3 54
  2. Genome-wide association for abdominal subcutaneous and visceral adipose reveals a novel locus for visceral fat in women. (PMID: 22589738) Fox CS … Borecki IB (PLoS genetics 2012) 3 54

Products for LINC01153 Gene

Sources for LINC01153 Gene