LINC01152 Gene (RNA Gene)

Long Intergenic Non-Protein Coding RNA 1152

GC17P072030
GIFtS:
14
See more...

Aliases for LINC01152 Gene

Subcategory (RNA class) for LINC01152 Gene

lncRNA

Number of RNA Genes sources:

4 / 17

Aliases for LINC01152 Gene

  • Long Intergenic Non-Protein Coding RNA 1152 2 3 5
  • LINC01152 2 5 165
  • TCONS_00025128 2 3
  • CMPD 2 3
  • NONHSAG022652.2 91
  • HSALNG0118529 164

External Ids for LINC01152 Gene

Previous GeneCards Identifiers for LINC01152 Gene

  • GC17P070030

Summaries for LINC01152 Gene

GeneCards Summary for LINC01152 Gene

LINC01152 (Long Intergenic Non-Protein Coding RNA 1152) is an RNA Gene, and is affiliated with the lncRNA class. Diseases associated with LINC01152 include Astrocytoma and Campomelic Dysplasia.

Additional gene information for LINC01152 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LINC01152 Gene

Genomics for LINC01152 Gene

GeneHancer (GH) Regulatory Elements Pubs

Download GeneHancer 2017 data
Promoters and enhancers for LINC01152 Gene
GeneHancer (GH) Identifier GH Type GH
Score		 GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites		 Gene Targets
GH17J072029 Promoter/Enhancer 1.7 EPDnew Ensembl ENCODE CraniofacialAtlas 600.7 +0.2 224 2.2 SP1 CTCF PRDM10 KDM1A POLR2A BACH1 LARP7 STAT3 PRDM1 ZIC2 ROCR LINC01152 SOX9
GH17J071970 Enhancer 0.8 Ensembl ENCODE 4.5 -59.7 -59702 0.8 ATF7 PRDM1 EED RUNX3 OSR2 CREB1 ATF2 ZFHX2 CTCF JUNB LINC01152 piR-31508-023 HSALNG0118526 SOX9
GH17J071899 Enhancer 0.6 Ensembl ENCODE 4.5 -129.9 -129880 3.2 JUNB BATF FOS JUND LINC01152 HSALNG0118520 ENSG00000283517 SOX9
GH17J072007 Enhancer 0.5 Ensembl 5.2 -21.7 -21690 1.2 JUND FOSL2 RCOR1 YY1 CHD2 GATA2 LINC01152 ROCR piR-60107 SOX9
GH17J072033 Enhancer 0.7 Ensembl 0.7 +4.1 4110 1.2 SP1 STAT3 IKZF2 RCOR1 TRIM22 PKNOX1 EED ARID3A DPF2 RUNX3 ROCR LINC01152 piR-38351-219 LOC102723517 SOX9 SOX9-AS1
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LINC01152 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for LINC01152 Gene

Genomic Locations for LINC01152 Gene
chr17:72,030,291-72,043,731
(GRCh38/hg38)
Size:
13,441 bases
Orientation:
Plus strand
chr17:70,026,432-70,034,889
(GRCh37/hg19)
Size:
8,458 bases
Orientation:
Plus strand

Genomic View for LINC01152 Gene

Genes around LINC01152 on UCSC Golden Path with GeneCards custom track
LINC01152 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Cytogenetic band:
LINC01152 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC01152 Gene
GeneLoc Logo Genomic Neighborhood • Exon Structure • Gene Density

RefSeq DNA sequence for LINC01152 Gene

Proteins for LINC01152 Gene

Products:

  1. Antibody
  2. Protein
  3. Assay

Post-translational modifications for LINC01152 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC01152 Gene

Domains & Families for LINC01152 Gene

Gene Families for LINC01152 Gene

HGNC:
genes like me logo Genes that share domains with LINC01152: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LINC01152 Gene

Function for LINC01152 Gene

Products:

  1. Animal Model
  2. CRISPR
  3. miRNA
  4. Inhibitory RNA
  5. Clone
  6. Cell Line

Phenotypes From GWAS Catalog for LINC01152 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC01152 Gene

Localization for LINC01152 Gene

Subcellular locations from

COMPARTMENTS
Extracellular space Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi Apparatus Nucleus Mitochondrion 0 1 2 3 4 5 Confidence
COMPARTMENTS Subcellular localization image for LINC01152 gene
Compartment Confidence
endosome 1

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC01152 Gene

Pathways & Interactions for LINC01152 Gene

PathCards logo

SuperPathways for LINC01152 Gene

No Data Available

Gene Ontology (GO) - Biological Process for LINC01152 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for LINC01152 Gene

Drugs & Compounds for LINC01152 Gene

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  1. Drug
No Compound Related Data Available

Transcripts for LINC01152 Gene

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  1. CRISPR
  2. miRNA
  3. Inhibitory RNA
  4. Clone

Non-coding RNA (ncRNA) Transcripts from RNAcentral for LINC01152 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS000075C156_9606 lncRNA 3578 4

HGNC: 16752,

RefSeq: NR_110124,

LncBook: HSALNT0244776,

LNCipedia: LINC01152:5,

URS000057DA87_9606 lncRNA 639 3

Ensembl: ENST00000538693 (view in UCSC) ,

LNCipedia: LINC01152:1,

NONCODE: NONHSAT055640.2,

URS0000759976_9606 lncRNA 3068 2

RefSeq: NR_110132,

LNCipedia: LINC01152:6,

URS0000EF6D4F_9606 lncRNA 3684 1

Ensembl: ENST00000472655 (view in UCSC) ,

URS0000EF6836_9606 lncRNA 1439 1

Ensembl: ENST00000538810 (view in UCSC) ,

LINC01152 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for LINC01152 Gene

5 NCBI additional mRNA sequence :

Alternative Splicing Database (ASD) splice patterns (SP) for LINC01152 Gene

No ASD Table

Relevant External Links for LINC01152 Gene

GeneLoc Exon Structure for
LINC01152

Expression for LINC01152 Gene

Products:

  1. Primer
  2. Gene Expression Assay

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for LINC01152 Gene

mRNA expression in normal human tissues for LINC01152 Gene
mRNA expression by GTEx for LINC01152 Gene

mRNA differential expression in normal tissues according to GTEx for LINC01152 Gene

This gene is overexpressed in Breast - Mammary Tissue (x8.0), Minor Salivary Gland (x7.1), Pancreas (x5.9), and Skin - Sun Exposed (Lower leg) (x4.6).

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for LINC01152

genes like me logo Genes that share expression patterns with LINC01152: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC01152 Gene

Orthologs for LINC01152 Gene

Evolution for LINC01152 Gene

ENSEMBL:
Gene Tree for LINC01152 (if available)
TreeFam:
Gene Tree for LINC01152 (if available)

No data available for Orthologs for LINC01152 Gene

Paralogs for LINC01152 Gene

No data available for Paralogs for LINC01152 Gene

Variants for LINC01152 Gene

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  1. SNP Genotyping and Copy Number Assay

Additional dbSNP identifiers (rs#s) for LINC01152 Gene

Structural Variations from Database of Genomic Variants (DGV) for LINC01152 Gene

Variant ID Type Subtype PubMed ID
esv29056 CNV loss 19812545
esv3573809 CNV gain 25503493
nsv833530 CNV gain+loss 17160897

Additional Variant Information for LINC01152 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC01152

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP and Variation tolerance for LINC01152 Gene

Disorders for LINC01152 Gene

MalaCards: The human disease database

(2) MalaCards diseases for LINC01152 Gene - From: LncRNADisease, DISEASES, and GeneCards

Disorder Aliases PubMed IDs
astrocytoma
  • astrocytic tumor
campomelic dysplasia
  • cmpd
- elite association - COSMIC cancer census association via MalaCards

Additional Disease Information for LINC01152

ATLAS of Genetics and Cytogenetics in Oncology and Haematology
Open Targets Platform
genes like me logo Genes that share disorders with LINC01152: view

No data available for UniProtKB/Swiss-Prot and Genatlas for LINC01152 Gene

Publications for LINC01152 Gene

  1. The long non-coding RNA ROCR contributes to SOX9 expression and chondrogenic differentiation of human mesenchymal stem cells. (PMID: 29084806) Barter MJ … Young DA (Development (Cambridge, England) 2017) 2 3
  2. Isolation of a testis-specific cDNA on chromosome 17q from a region adjacent to the breakpoint of t(12;17) observed in a patient with acampomelic campomelic dysplasia and sex reversal. (PMID: 8789441) Ninomiya S … Nakamura Y (Human molecular genetics 1996) 2 3
  3. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K … Sugano S (Genome research 2006) 3

ExternalLinks

View latest publications for LINC01152 gene in Mastermind

Products for LINC01152 Gene

Sources for LINC01152 Gene