Free for academic non-profit institutions. Other users need a Commercial license
Aliases for LINC01152 Gene
Data sources for LINC01152 Gene:
Subcategory (RNA class) for LINC01152 Gene
lncRNA
Aliases for LINC01152 Gene
- Long Intergenic Non-Protein Coding RNA 1152 (HGNC, NCBI Entrez Gene, Ensembl)
- TCONS_00025128 (HGNC, NCBI Entrez Gene)
- RP11-84E24.3 (HGNC, NCBI Entrez Gene)
- LINC01152 (Ensembl, LNCipedia)
- CMPD (HGNC, NCBI Entrez Gene)
- NONHSAG022652.2 (NONCODE)
- HSALNG0118529 (LncBook)
External Ids for LINC01152 Gene
- HGNC: 16752
- NCBI Entrez Gene: 102606463
- Ensembl: ENSG00000256124
Previous GeneCards Identifiers for LINC01152 Gene
- GC17P070030
Summaries for LINC01152 Gene
GeneCards Summary for LINC01152 Gene
LINC01152 (Long Intergenic Non-Protein Coding RNA 1152) is an RNA Gene, and is affiliated with the lncRNA class. Diseases associated with LINC01152 include Campomelic Dysplasia.
Additional gene information for LINC01152 Gene
- HGNC (16752)
- NCBI Entrez Gene (102606463)
- Ensembl (ENSG00000256124)
- Open Targets Platform(ENSG00000256124)
- Search for LINC01152 at DataMed
- Search for LINC01152 at HumanCyc
No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LINC01152 Gene
Genomics for LINC01152 Gene
GeneHancer (GH) Regulatory Elements Pubs
Promoters and enhancers for LINC01152 Gene
| GeneHancer (GH) Identifier | GH Type | GH Score |
GH Sources | Gene Association Score | Total Score | TSS distance (kb) | Number of Genes Away | Size (kb) | Transcription Factor Binding Sites |
Gene Targets |
|---|---|---|---|---|---|---|---|---|---|---|
| GH17J072029 | Promoter/Enhancer | 1.7 | EPDnew Ensembl ENCODE CraniofacialAtlas | 250.7 | +0.3 | 325 | 2.4 | ZBTB10 SP1 BCL11A POLR2A CTCF ELF1 ZIC2 ZNF513 IRF4 ZNF341 | ROCR LINC01152 piR-38351-219 SOX9 | |
| GH17J071970 | Enhancer | 0.8 | Ensembl ENCODE | 4.5 | -59.8 | -59754 | 0.8 | JUND BATF CTCF MTA3 ATF2 JUNB JUN IKZF1 ZNF366 ATF7 | LINC01152 ENSG00000283517 HSALNG0118527 HSALNG0118520 HSALNG0118526 SOX9 | |
| GH17J071899 | Enhancer | 0.6 | Ensembl ENCODE | 4.5 | -129.8 | -129755 | 3 | JUND BATF JUNB FOS | LINC01152 HSALNG0118525 HSALNG0118526 ENSG00000283517 HSALNG0118520 SOX9 | |
| GH17J072007 | Enhancer | 0.4 | Ensembl | 5.2 | -21.8 | -21804 | 1.1 | JUND RCOR1 GATA2 CHD2 | HSALNG0118520 LINC01152 ROCR SOX9 | |
| GH17J071995 | Enhancer | 0.2 | Ensembl | 4.8 | -34.5 | -34490 | 0.8 | LINC01152 piR-60107 HSALNG0118520 HSALNG0118527 HSALNG0118526 SOX9 |
- Elite GeneHancer and/or Elite GeneHancer-gene association
Download GeneHancer data from 2017 publication |
Request up-to-date GeneHancer data (full dataset)
GeneHancers around LINC01152 on the GeneHancer Hub at the UCSC Golden Path
Genomic Locations for LINC01152 Gene
Latest Assembly
- chr17:72,030,290-72,043,731
- (GRCh38/hg38)
- Size:
- 13,442 bases
- Orientation:
- Plus strand
Previous Assembly
- chr17:70,026,795-70,037,438
- (GRCh37/hg19 by Entrez Gene)
- Size:
- 10,644 bases
- Orientation:
- Plus strand
- chr17:70,026,432-70,034,889
- (GRCh37/hg19 by Ensembl)
- Size:
- 8,458 bases
- Orientation:
- Plus strand
Genomic View for LINC01152 Gene
Genes around LINC01152 on UCSC Golden Path with GeneCards custom track
LINC01152 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path
- Cytogenetic band:
-
- 17q24.3 by HGNC
- 17q24.3 by Entrez Gene
- 17q24.3 by Ensembl
LINC01152 Gene in genomic location: bands according to
Ensembl, locations according to GeneLoc
(and/or Entrez Gene and/or Ensembl if different)
Genomic Neighborhood
• Exon Structure
• Gene Density
RefSeq DNA sequence for LINC01152 Gene
Proteins for LINC01152 Gene
Post-translational modifications for LINC01152 Gene
No Post-translational modifications
No data available for DME Specific Peptides for LINC01152 Gene
Domains & Families for LINC01152 Gene
Gene Families for LINC01152 Gene
No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LINC01152 Gene
Function for LINC01152 Gene
Phenotypes From GWAS Catalog for LINC01152 Gene
CRISPR products for research
Inhibitory RNAs for research
Clone products for research
Cell Lines for research
No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC01152 Gene
Localization for LINC01152 Gene
| Compartment | Confidence |
|---|---|
| extracellular | 1 |
| endosome | 1 |
No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC01152 Gene
Transcripts for LINC01152 Gene
Non-coding RNA (ncRNA) Transcripts from RNAcentral for LINC01152 Gene
| RNAcentral Transcript ID | Subcategory | Length (nts) | # of Sources | Source Identifiers and Annotations |
|---|---|---|---|---|
| URS000075C156_9606 | lncRNA | 3581 | 3 |
RefSeq: NR_110124, LncBook: HSALNT0244776, LNCipedia: LINC01152:5, |
| URS000057DA87_9606 | lncRNA | 641 | 3 |
Ensembl: ENST00000538693 (view in UCSC) , LNCipedia: LINC01152:1, NONCODE: NONHSAT055640.2, |
| URS0000759976_9606 | lncRNA | 3068 | 2 |
RefSeq: NR_110132, LNCipedia: LINC01152:6, |
| URS0000EF6D4F_9606 | lncRNA | 3684 | 1 |
Ensembl: ENST00000472655 (view in UCSC) , |
| URS0000EF6836_9606 | lncRNA | 1439 | 1 |
Ensembl: ENST00000538810 (view in UCSC) , |
LINC01152 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path
Additional transcripts not in RNAcentral for LINC01152 Gene
- 5 NCBI additional mRNA sequence :
CRISPR products for research
Inhibitory RNAs for research
Clone products for research
Relevant External Links for LINC01152 Gene
- GeneLoc Exon Structure for
- LINC01152
Expression for LINC01152 Gene
mRNA differential expression in normal tissues according to GTEx for LINC01152 Gene
This gene is overexpressed in Breast - Mammary Tissue (x8.0), Minor Salivary Gland (x7.1), Pancreas (x5.9), and Skin - Sun Exposed (Lower leg) (x4.6).
Transcriptomic regulation report from SPP (The Signaling Pathways Project) for LINC01152
Gene Expression Assays for research
No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC01152 Gene
Orthologs for LINC01152 Gene
No data available for Orthologs for LINC01152 Gene
Paralogs for LINC01152 Gene
No data available for Paralogs for LINC01152 Gene
Variants for LINC01152 Gene
All consequence types are included: molecular consequences (e.g. missense, synonymous), and location-based (e.g. intron, upstream).
Additional Variant Information for LINC01152 Gene
- SNPedia medical, phenotypic, and genealogical associations of SNPs for
- LINC01152
SNP Genotyping and Copy Number Assays for research
No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP and Variation tolerance for LINC01152 Gene
Disorders for LINC01152 Gene
| Disorder | Aliases | PubMed IDs |
|---|---|---|
| campomelic dysplasia |
|
|
Search LINC01152 in MalaCards
View complete list of genes associated with diseases
Additional Disease Information for LINC01152
- Atlas
- ATLAS of Genetics and Cytogenetics in Oncology and Haematology
- Open Targets Platform
- Open Targets Platform
No data available for UniProtKB/Swiss-Prot and Genatlas for LINC01152 Gene
Publications for LINC01152 Gene
- The long non-coding RNA ROCR contributes to SOX9 expression and chondrogenic differentiation of human mesenchymal stem cells. (PMID: 29084806) Barter MJ … Young DA (Development (Cambridge, England) 2017) 2 3
- Isolation of a testis-specific cDNA on chromosome 17q from a region adjacent to the breakpoint of t(12;17) observed in a patient with acampomelic campomelic dysplasia and sex reversal. (PMID: 8789441) Ninomiya S … Nakamura Y (Human molecular genetics 1996) 2 3
- Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K … Sugano S (Genome research 2006) 3
Products for LINC01152 Gene
- Browse OriGene Antibodies
- Custom Antibody Services
- Browse OriGene ELISA Kits
- Custom Assay Services
- Search Origene for Purified Proteins, MassSpec and Protein Over-expression Lysates for LINC01152
- Origene Custom Protein Services for LINC01152
- Browse OriGene Inhibitory RNA Products For LINC01152
- Browse OriGene qPCR primer pairs and template standards
- Browse CRISPR knockouts for LINC01152
- Custom cloning services - gene synthesis, subcloning, mutagenesis, variant library, vector shuttling
- Browse OriGene miRNA Products For LINC01152
- Browse Sino Biological cDNA Clones
- Browse Sino Biological Recombinant Proteins
- Browse Sino Biological Cell Lysates
- Browse Sino Biological Antibodies
- Browse Sino Biological Assays
- Browse ELISA Kits
- Browse CRO Services
- High-throughput Antibody Production Service
- Protein Production Service
- Epitope Tag Antibodies & Reporter Protein Antibodies
- Lentiviral ORF Clones
- Browse GeneCopoeia Cell Lines
- Search GeneCopoeia for knockout CRISPR/Cas9 clones, lentivirus, and/or AAV products for LINC01152
- Search GeneCopoeia for ORF cDNA, lentivirus, AAV viral particles, and/or promoter clone products for LINC01152
- Search GeneCopoeia for miRNA 3'UTR Target clone products for LINC01152
- Search GeneCopoeia for shRNA, lentivirus, and/or AAV clone products for LINC01152
Sources for LINC01152 Gene
- (1) GeneCards
- (2) HGNC
- (3) NCBI Entrez Gene
- (4) UniProtKB/Swiss-Prot
- (5) Ensembl
- (6) OMIM® (Updated: 05-Mar-2021)
- (7) GeneLoc
- (8) Gene Wiki
- (9) UCSC
- (10) PhosphoSitePlus
- (11) Cell Signaling Technology
- (12) GO
- (13) UniProtKB/TrEMBL
- (14) InterPro
- (15) ProtoNet
- (16) Blocks
- (17) MGI
- (18) IUBMB
- (19) KEGG
- (20) MINT
- (21) STRING
- (22) IntAct
- (23) Novoseek
- (24) PharmGKB
- (25) DrugBank
- (26) HMDB
- (27) ASD
- (28) SAGE
- (29) SOURCE
- (30) HomoloGene
- (31) PanEnsembl
- (32) euGenes
- (33) SGD
- (34) FlyBase
- (35) WormBase
- (36) Pseudogene
- (37) DGV
- (38) dbSNP
- (39) GenAtlas
- (40) HGMD
- (41) GAD
- (42) BGMUT
- (43) HuGE
- (44) Atlas
- (45) GenBank
- (46) HORDE
- (47) HUGE
- (48) IMGT
- (49) Leiden
- (50) miRBase
- (51) DME
- (52) OriGene
- (53) PubMed
- (54) R&D Systems
- (55) TGDB
- (56) Tocris
- (57) Abcam
- (58) Novus Biologicals
- (59) ProSpec
- (60) Sino Biological
- (61) GenScript
- (62) Qiagen
- (63) OCA
- (64) Proteopedia
- (65) MOPED
- (66) neXtProt
- (67) Reactome
- (68) GeneGo (Thomson Reuters)
- (69) DISEASES
- (70) SIMAP
- (71) GenomeRNAi
- (72) LifeMap
- (73) miRTarBase
- (74) MalaCards
- (75) Invitrogen
- (76) BitterDB
- (77) ESI-BIO
- (78) RefSeq
- (79) BioSystems
- (80) MaxQB
- (81) IUPHAR
- (82) BioGPS
- (83) Illumina
- (84) COMPARTMENTS
- (85) HOMER
- (86) PaxDb
- (87) ApexBio
- (88) Addgene
- (89) antibodies-online
- (90) CYP
- (91) NONCODE
- (92) TreeFam
- (93) PathCards
- (94) GeneReviews
- (95) GeneTex
- (96) Taconic Biosciences
- (97) GTEx
- (98) ProteomicsDB
- (99) SCBT
- (100) DGIdb
- (101) ClinicalTrials
- (102) RVIS
- (103) SIGNOR
- (104) diseasecard
- (105) NIH Rare Diseases
- (106) Orphanet
- (107) UMLS
- (108) GTR
- (109) Disease Ontology
- (110) MedlinePlus Genetics
- (111) MeSH
- (112) MedlinePlus
- (113) CDC
- (114) NINDS
- (115) NCBI Bookshelf
- (116) ClinVar
- (117) Gene Damage Index
- (118) HPO
- (119) UDN
- (120) VISTA
- (121) FANTOM5
- (122) ENCODE
- (123) ProSci
- (124) Horizon
- (125) The Signaling Pathways Project (SPP)
- (126) IID
- (127) VectorBuilder
- (128) SNPedia
- (129) BRCA Exchange
- (130) CIViC
- (131) ProteoGenix
- (132) dbSUPER
- (133) TISSUES
- (134) Gene ORGANizer
- (135) abm
- (136) Human Protein Atlas
- (137) GWAS Catalog
- (138) Monarch Initiative
- (139) DataMed
- (140) HumanCyc
- (141) UCNEbase
- (142) EPDnew
- (143) Applied Biosystems
- (144) GlyConnect
- (145) Aminode
- (146) GeneCopoeia
- (147) GPS-Prot
- (148) RNAcentral
- (149) LncRNADisease
- (150) LOVD
- (151) miR2Disease
- (152) DiseaseEnhancer
- (153) Boster Bio
- (154) Biorbyt
- (155) Biocompare
- (156) Mastermind
- (157) CTD^2 Dashboard
- (158) CraniofacialAtlas
- (159) GeneImprint
- (160) Synthego
- (161) ENA
- (162) GtRNAdb
- (163) LncBase
- (164) LncBook
- (165) LNCipedia
- (166) Modomics
- (167) PDBe
- (168) Rfam
- (169) SILVA
- (170) snOPY
- (171) SRPDB
- (172) GENCODE
- (173) TarBase
- (174) Open Targets Platform
- (175) 5SRRNADB
- (176) snoDB
- (177) MirGeneDB