Aliases for LINC01150 Gene

Subcategory (RNA class) for LINC01150 Gene

lncRNA

Number of RNA Genes sources:

3 / 14

Aliases for LINC01150 Gene

  • Long Intergenic Non-Protein Coding RNA 1150 2 3 5
  • LINC01150 2 168
  • TCONS_00019134 3
  • NONHSAG007401 92
  • HSALNG0082161 167
  • 2G7 3

External Ids for LINC01150 Gene

Additional External Ids for LINC01150 Gene

Previous GeneCards Identifiers for LINC01150 Gene

  • GC11P001924

Summaries for LINC01150 Gene

GeneCards Summary for LINC01150 Gene

LINC01150 (Long Intergenic Non-Protein Coding RNA 1150) is an RNA Gene, and is affiliated with the lncRNA class. Diseases associated with LINC01150 include Powassan Encephalitis and Tick Infestation.

Additional gene information for LINC01150 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LINC01150 Gene

Genomics for LINC01150 Gene

GeneHancer (GH) Regulatory Elements for LINC01150 Gene

Promoters and enhancers for LINC01150 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH11J001896 Promoter/Enhancer 0.9 Ensembl ENCODE 500.7 +0.5 542 1.4 BMI1 POLR2A ATF2 TAF1 YY1 CTCF RNF2 RAD21 SRF RUNX3 LINC01150 U62668 TNNT3 MRPL23 MRPL23-AS1
GH11J001916 Promoter/Enhancer 2 EPDnew Ensembl ENCODE CraniofacialAtlas dbSUPER 5.6 +27.9 27864 16.5 CTCF ZNF263 ZNF623 RAD21 MXI1 ZNF341 NR2F2 POLR2A TARDBP NFXL1 TNNT3 MRPL23-AS1 LINC01150 ENSG00000288250-001 lnc-CTSD-5
GH11J001905 Enhancer 1 Ensembl ENCODE CraniofacialAtlas dbSUPER 5.6 +10.8 10847 5.2 REST EZH2 ATF4 ATF2 JUN POLR2A SUZ12 SMARCA4 RNF2 CBX8 MRPL23-AS1 LINC01150 TNNT3 U62668
GH11J001903 Enhancer 0.4 ENCODE dbSUPER 0.4 +7.1 7050 0.9 NR2F2 MRPL23 LINC01150 U62668 TNNT3
GH11J001911 Enhancer 0.5 Ensembl ENCODE 0.4 +16.1 16134 2.2 SPI1 MAFK TNNT3 LINC01150 U62668
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LINC01150 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LINC01150 Gene

Genomic Locations for LINC01150 Gene
chr11:1,896,759-1,908,656
(GRCh38/hg38)
Size:
11,898 bases
Orientation:
Plus strand
chr11:1,923,877-1,929,145
(GRCh37/hg19)
Size:
5,269 bases
Orientation:
Plus strand

Genomic View for LINC01150 Gene

Genes around LINC01150 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LINC01150 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC01150 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINC01150 Gene

Proteins for LINC01150 Gene

Post-translational modifications for LINC01150 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC01150 Gene

Domains & Families for LINC01150 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LINC01150 Gene

Function for LINC01150 Gene

Phenotypes From GWAS Catalog for LINC01150 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC01150 Gene

Localization for LINC01150 Gene

Subcellular locations from

COMPARTMENTS
Extracellular space Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi Apparatus Nucleus Mitochondrion 0 1 2 3 4 5 Confidence
COMPARTMENTS Subcellular localization image for LINC01150 gene
Compartment Confidence
extracellular 2
plasma membrane 1
cytoskeleton 1
nucleus 1
cytosol 1

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC01150 Gene

Pathways & Interactions for LINC01150 Gene

PathCards logo

SuperPathways for LINC01150 Gene

No Data Available
;

Gene Ontology (GO) - Biological Process for LINC01150 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for LINC01150 Gene

Drugs & Compounds for LINC01150 Gene

No Compound Related Data Available

Transcripts for LINC01150 Gene

mRNA/cDNA for LINC01150 Gene

5 RNACentral transcripts :
1 REFSEQ mRNAs :
1 NCBI additional mRNA sequence :
4 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
2 NONCODE transcripts :
4 LncBook transcripts :
2 LNCipedia transcripts :

Alternative Splicing Database (ASD) splice patterns (SP) for LINC01150 Gene

No ASD Table

Relevant External Links for LINC01150 Gene

GeneLoc Exon Structure for
LINC01150

Expression for LINC01150 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for LINC01150 Gene

genes like me logo Genes that share expression patterns with LINC01150: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC01150 Gene

Orthologs for LINC01150 Gene

Evolution for LINC01150 Gene

ENSEMBL:
Gene Tree for LINC01150 (if available)
TreeFam:
Gene Tree for LINC01150 (if available)

No data available for Orthologs for LINC01150 Gene

Paralogs for LINC01150 Gene

No data available for Paralogs for LINC01150 Gene

Variants for LINC01150 Gene

Additional dbSNP identifiers (rs#s) for LINC01150 Gene

Structural Variations from Database of Genomic Variants (DGV) for LINC01150 Gene

Variant ID Type Subtype PubMed ID
dgv132e201 CNV deletion 23290073
dgv33n16 CNV deletion 17901297
dgv34n16 OTHER inversion 17901297
dgv571n106 CNV deletion 24896259
esv1011096 OTHER inversion 20482838
esv1617544 OTHER inversion 17803354
esv2490419 CNV deletion 19546169
esv2615443 OTHER inversion 19546169
esv2666901 CNV deletion 23128226
esv2743978 CNV deletion 23290073
esv29980 CNV loss 17803354
esv3259163 CNV deletion 24192839
esv3349780 OTHER inversion 20981092
esv3547208 CNV deletion 23714750
esv3625119 CNV loss 21293372
esv3625120 CNV gain 21293372
esv4676 CNV loss 18987735
esv7031 CNV loss 19470904
esv990020 CNV deletion 20482838
nsv1039289 CNV gain 25217958
nsv1047474 CNV gain 25217958
nsv1070425 CNV deletion 25765185
nsv1152189 CNV deletion 26484159
nsv467645 CNV gain 19166990
nsv469926 CNV loss 18288195
nsv513689 OTHER inversion 21212237
nsv518858 CNV loss 19592680
nsv522320 CNV loss 19592680
nsv553047 CNV gain 21841781
nsv61 CNV deletion 15895083
nsv7213 OTHER inversion 18451855
nsv7643 CNV deletion 18451855

Additional Variant Information for LINC01150 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC01150

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP and Variation tolerance for LINC01150 Gene

Disorders for LINC01150 Gene

MalaCards: The human disease database

(2) MalaCards diseases for LINC01150 Gene - From: DISEASES

Disorder Aliases PubMed IDs
powassan encephalitis
  • powassan encephalitis virus infection
tick infestation
  • tick infestations
- elite association - COSMIC cancer census association via MalaCards

Additional Disease Information for LINC01150

genes like me logo Genes that share disorders with LINC01150: view

No data available for UniProtKB/Swiss-Prot and Genatlas for LINC01150 Gene

Publications for LINC01150 Gene

  1. An extended region of biallelic gene expression and rodent-human synteny downstream of the imprinted H19 gene on chromosome 11p15.5. (PMID: 8968746) Yuan L … Tycko B (Human molecular genetics 1996) 2 3 54
  2. Systematic screening of an arrayed cDNA library by PCR. (PMID: 7892249) Munroe DJ … Housman DE (Proceedings of the National Academy of Sciences of the United States of America 1995) 3 54

Products for LINC01150 Gene

Sources for LINC01150 Gene