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Aliases for LINC01149 Gene
Subcategory (RNA class) for LINC01149 Gene
lncRNA
Number of RNA Genes sources:
3 / 17
Aliases for LINC01149 Gene
External Ids for LINC01149 Gene
- HGNC: 39757
- Entrez Gene: 101929111
- Ensembl: ENSG00000230174
Additional External Ids for LINC01149 Gene
Previous GeneCards Identifiers for LINC01149 Gene
- GC06P031411
- GC06P032304
- GC06P032492
- GC06P032597
- GC06P033388
- GC06P031979
- GC06P031598
- GC06P032093
Summaries for LINC01149 Gene
GeneCards Summary for LINC01149 Gene
LINC01149 (Long Intergenic Non-Protein Coding RNA 1149) is an RNA Gene, and is affiliated with the lncRNA class.
Additional gene information for LINC01149 Gene
No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LINC01149 Gene
Genomics for LINC01149 Gene
GeneHancer (GH) Regulatory Elements Pubs
Promoters and enhancers for LINC01149 Gene
| GeneHancer (GH) Identifier | GH Type | GH Score |
GH Sources | Gene Association Score | Total Score | TSS distance (kb) | Number of Genes Away | Size (kb) | Transcription Factor Binding Sites |
Gene Targets |
|---|---|---|---|---|---|---|---|---|---|---|
| GH06J031441 | Enhancer | 1 | Ensembl ENCODE | 600.7 | +0.6 | 563 | 1.6 | GATAD2A CTCF JUND ZNF143 PHF21A ZSCAN4 RXRB PATZ1 REST RAD21 | LINC01149 MICA ENSG00000272221 HLA-C MICB HCG22 PPIAP9 MCCD1 RPL15P4 SNORD117 | |
| GH06J031423 | Enhancer | 0.3 | Ensembl | 0.4 | -17.9 | -17889 | 0.6 | FOXA2 FOXA1 | MICA ENSG00000272221 PPIAP9 RPL15P4 MCCD1 POU5F1 DDX39B SNORD117 HCG21 ENSG00000271581 | |
| GH06J031449 | Enhancer | 0.2 | Ensembl | 0.4 | +7.5 | 7511 | 0.2 | ENSG00000272221 POU5F1 piR-41195-025 LINC01149 MICA MICB MN298114-200 ENSG00000288587 HCP5 |
- Elite GeneHancer and/or Elite GeneHancer-gene association
Download GeneHancer data from 2017 publication |
Request up-to-date GeneHancer data (full dataset)
GeneHancers around LINC01149 on the GeneHancer Hub at the UCSC Golden Path
Genomic Locations for LINC01149 Gene
Genomic Locations for LINC01149 Gene
- chr6:31,441,590-31,448,577
- (GRCh38/hg38)
- Size:
- 6,988 bases
- Orientation:
- Plus strand
- chr6:31,409,444-31,414,750
- (GRCh37/hg19)
- Size:
- 5,307 bases
- Orientation:
- Plus strand
Genomic View for LINC01149 Gene
Genes around LINC01149 on UCSC Golden Path with GeneCards custom track
LINC01149 in the GeneCards ncRNA compendium hub on the UCSC Golden Path
LINC01149 Gene in genomic location: bands according to
Ensembl, locations according to GeneLoc
(and/or Entrez Gene and/or Ensembl if different)
Genomic Neighborhood
• Exon Structure
• Gene Density
RefSeq DNA sequence for LINC01149 Gene
Proteins for LINC01149 Gene
Post-translational modifications for LINC01149 Gene
No Post-translational modifications
Antibody Products
Protein Products
- Search Origene for Purified Proteins, MassSpec and Protein Over-expression Lysates for LINC01149
- Origene Custom Protein Services for LINC01149
No data available for DME Specific Peptides for LINC01149 Gene
Domains & Families for LINC01149 Gene
Gene Families for LINC01149 Gene
No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LINC01149 Gene
Function for LINC01149 Gene
Phenotypes From GWAS Catalog for LINC01149 Gene
Animal Model Products
- Taconic Biosciences: Generate A Custom CRISPR Mouse Model For Your Study
CRISPR Products
- Browse CRISPR knockouts for LINC01149
miRNA Products
Inhibitory RNA Products
Clone Products
No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC01149 Gene
Localization for LINC01149 Gene
No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC01149 Gene
Transcripts for LINC01149 Gene
Non-coding RNA (ncRNA) Transcripts from RNAcentral for LINC01149 Gene
| RNAcentral Transcript ID | Subcategory | Length (nts) | # of Sources | Source Identifiers and Annotations |
|---|---|---|---|---|
| URS0000212EDA_9606 | lncRNA | 2141 | 3 |
Ensembl: ENST00000430364 (view in UCSC) , LNCipedia: LINC01149:2, NONCODE: NONHSAT108771.2, |
| URS0000A76761_9606 | lncRNA | 2141 | 2 |
HGNC: 39757, RefSeq: NR_144465, |
| URS00008C30B4_9606 | lncRNA | 2140 | 2 |
Ensembl: ENST00000449972 (view in UCSC) , NONCODE: NONHSAT118397.2, |
| URS00008C3645_9606 | lncRNA | 2139 | 2 |
Ensembl: ENST00000413634 (view in UCSC) , NONCODE: NONHSAT117408.2, |
| URS00008C26BD_9606 | lncRNA | 2135 | 2 |
Ensembl: ENST00000414257 (view in UCSC) , NONCODE: NONHSAT116707.2, |
LINC01149 in the GeneCards ncRNA compendium hub on the UCSC Golden Path
Additional transcripts not in RNAcentral for LINC01149 Gene
- 1 NCBI additional mRNA sequence :
CRISPR Products
- Browse CRISPR knockouts for LINC01149
miRNA Products
Inhibitory RNA Products
Clone Products
Relevant External Links for LINC01149 Gene
- GeneLoc Exon Structure for
- LINC01149
Expression for LINC01149 Gene
mRNA differential expression in normal tissues according to GTEx for LINC01149 Gene
This gene is overexpressed in Testis (x36.7).
Transcriptomic regulation report from SPP (The Signaling Pathways Project) for LINC01149
Primer Products
No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC01149 Gene
Orthologs for LINC01149 Gene
No data available for Orthologs for LINC01149 Gene
Paralogs for LINC01149 Gene
No data available for Paralogs for LINC01149 Gene
Variants for LINC01149 Gene
Additional Variant Information for LINC01149 Gene
- SNPedia medical, phenotypic, and genealogical associations of SNPs for
- LINC01149
No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for LINC01149 Gene
Disorders for LINC01149 Gene
Additional Disease Information for LINC01149
No disorders were found for LINC01149 Gene.
No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LINC01149 Gene
Publications for LINC01149 Gene
- Identification of novel germline polymorphisms governing capecitabine sensitivity. (PMID: 22864933) O'Donnell PH … Dolan ME (Cancer 2012) 3
- Genome-wide association study of Stevens-Johnson Syndrome and Toxic Epidermal Necrolysis in Europe. (PMID: 21801394) Génin E … Mockenhaupt M (Orphanet journal of rare diseases 2011) 3
- Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3
Products for LINC01149 Gene
- Browse OriGene Antibodies
- Custom Antibody Services
- Browse OriGene ELISA Kits
- Custom Assay Services
- Search Origene for Purified Proteins, MassSpec and Protein Over-expression Lysates for LINC01149
- Origene Custom Protein Services for LINC01149
- Browse OriGene Inhibitory RNA Products For LINC01149
- Browse OriGene qPCR primer pairs and template standards
- Browse CRISPR knockouts for LINC01149
- Custom cloning services - gene synthesis, subcloning, mutagenesis, variant library, vector shuttling
- Browse OriGene miRNA Products For LINC01149
- Browse Sino Biological cDNA Clones
- Browse Sino Biological Recombinant Proteins
- Browse Sino Biological Cell Lysates
- Browse Sino Biological Antibodies
- Browse Sino Biological Assays
- Browse ELISA Kits
- Browse CRO Services
- High-throughput Antibody Production Service
- Protein Production Service
- Epitope Tag Antibodies & Reporter Protein Antibodies
- Lentiviral ORF Clones
- Browse GeneCopoeia Cell Lines
- Search GeneCopoeia for knockout CRISPR/Cas9 clones, lentivirus, and/or AAV products for LINC01149
- Search GeneCopoeia for ORF cDNA, lentivirus, AAV viral particles, and/or promoter clone products for LINC01149
- Search GeneCopoeia for miRNA 3'UTR Target clone products for LINC01149
- Search GeneCopoeia for shRNA, lentivirus, and/or AAV clone products for LINC01149
Sources for LINC01149 Gene
- (1) GeneCards
- (2) HGNC
- (3) NCBI Entrez Gene
- (4) UniProtKB/Swiss-Prot
- (5) Ensembl
- (6) OMIM
- (7) GeneLoc
- (8) Gene Wiki
- (9) UCSC
- (10) PhosphoSitePlus
- (11) Cell Signaling Technology
- (12) GO
- (13) UniProtKB/TrEMBL
- (14) InterPro
- (15) ProtoNet
- (16) Blocks
- (17) MGI
- (18) IUBMB
- (19) KEGG
- (20) MINT
- (21) STRING
- (22) IntAct
- (23) Novoseek
- (24) PharmGKB
- (25) DrugBank
- (26) HMDB
- (27) ASD
- (28) SAGE
- (29) SOURCE
- (30) HomoloGene
- (31) PanEnsembl
- (32) euGenes
- (33) SGD
- (34) FlyBase
- (35) WormBase
- (36) Pseudogene
- (37) DGV
- (38) dbSNP
- (39) GenAtlas
- (40) HGMD
- (41) GAD
- (42) BGMUT
- (43) HuGE
- (44) Atlas
- (45) GenBank
- (46) HORDE
- (47) HUGE
- (48) IMGT
- (49) Leiden
- (50) miRBase
- (51) DME
- (52) OriGene
- (53) PubMed
- (54) R&D Systems
- (55) TGDB
- (56) Tocris
- (57) Abcam
- (58) Novus Biologicals
- (59) ProSpec
- (60) Sino Biological
- (61) GenScript
- (62) Qiagen
- (63) OCA
- (64) Proteopedia
- (65) MOPED
- (66) neXtProt
- (67) Reactome
- (68) GeneGo (Thomson Reuters)
- (69) DISEASES
- (70) SIMAP
- (71) GenomeRNAi
- (72) LifeMap
- (73) miRTarBase
- (74) MalaCards
- (75) Invitrogen
- (76) BitterDB
- (77) ESI-BIO
- (78) RefSeq
- (79) BioSystems
- (80) MaxQB
- (81) IUPHAR
- (82) BioGPS
- (83) Illumina
- (84) COMPARTMENTS
- (85) HOMER
- (86) PaxDb
- (87) ApexBio
- (88) Addgene
- (89) antibodies-online
- (90) CYP
- (91) NONCODE
- (92) TreeFam
- (93) PathCards
- (94) GeneReviews
- (95) GeneTex
- (96) Taconic Biosciences
- (97) GTEx
- (98) ProteomicsDB
- (99) SCBT
- (100) DGIdb
- (101) ClinicalTrials
- (102) RVIS
- (103) SIGNOR
- (104) diseasecard
- (105) NIH Rare Diseases
- (106) Orphanet
- (107) UMLS
- (108) GTR
- (109) Disease Ontology
- (110) Genetics Home Reference
- (111) MeSH
- (112) MedlinePlus
- (113) CDC
- (114) NINDS
- (115) NCBI Bookshelf
- (116) ClinVar
- (117) Gene Damage Index
- (118) HPO
- (119) UDN
- (120) VISTA
- (121) FANTOM5
- (122) ENCODE
- (123) ProSci
- (124) Horizon
- (125) The Signaling Pathways Project (SPP)
- (126) IID
- (127) VectorBuilder
- (128) SNPedia
- (129) BRCA Exchange
- (130) CIViC
- (131) ProteoGenix
- (132) dbSUPER
- (133) TISSUES
- (134) Gene ORGANizer
- (135) abm
- (136) Human Protein Atlas
- (137) GWAS Catalog
- (138) Monarch Initiative
- (139) DataMed
- (140) HumanCyc
- (141) UCNEbase
- (142) EPDnew
- (143) Applied Biosystems
- (144) GlyConnect
- (145) Aminode
- (146) GeneCopoeia
- (147) GPS-Prot
- (148) RNACentral
- (149) LncRNADisease
- (150) LOVD
- (151) miR2Disease
- (152) DiseaseEnhancer
- (153) Boster Bio
- (154) Biorbyt
- (155) Biocompare
- (156) Mastermind
- (157) CTD^2 Dashboard
- (158) CraniofacialAtlas
- (159) GeneImprint
- (160) Synthego
- (161) ENA
- (162) GtRNAdb
- (163) LncBase
- (164) LncBook
- (165) LNCipedia
- (166) Modomics
- (167) PDBe
- (168) Rfam
- (169) SILVA
- (170) snOPY
- (171) SRPDB
- (172) GENCODE
- (173) TarBase
- (174) Signalway Antibody
- (175) Open Targets Platform
- (176) 5SRRNADB
- (177) snoDB
- (178) MirGeneDB