Aliases for LINC01149 Gene

Subcategory (RNA class) for LINC01149 Gene

lncRNA

Number of RNA Genes sources:

3 / 17

Aliases for LINC01149 Gene

  • Long Intergenic Non-Protein Coding RNA 1149 2 3 5
  • LINC01149 2 5 165
  • XXbac-BPG181B23.4 2 3
  • NONHSAG043480.2 91
  • NONHSAG045738.2 91
  • NONHSAG046110.2 91
  • NONHSAG046617.2 91
  • HSALNG0049268 164

External Ids for LINC01149 Gene

Additional External Ids for LINC01149 Gene

Previous GeneCards Identifiers for LINC01149 Gene

  • GC06P031411
  • GC06P032304
  • GC06P032492
  • GC06P032597
  • GC06P033388
  • GC06P031979
  • GC06P031598
  • GC06P032093

Summaries for LINC01149 Gene

GeneCards Summary for LINC01149 Gene

LINC01149 (Long Intergenic Non-Protein Coding RNA 1149) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for LINC01149 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LINC01149 Gene

Genomics for LINC01149 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for LINC01149 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH06J031441 Enhancer 1 Ensembl ENCODE 600.7 +0.6 563 1.6 GATAD2A CTCF JUND ZNF143 PHF21A ZSCAN4 RXRB PATZ1 REST RAD21 LINC01149 MICA ENSG00000272221 HLA-C MICB HCG22 PPIAP9 MCCD1 RPL15P4 SNORD117
GH06J031423 Enhancer 0.3 Ensembl 0.4 -17.9 -17889 0.6 FOXA2 FOXA1 MICA ENSG00000272221 PPIAP9 RPL15P4 MCCD1 POU5F1 DDX39B SNORD117 HCG21 ENSG00000271581
GH06J031449 Enhancer 0.2 Ensembl 0.4 +7.5 7511 0.2 ENSG00000272221 POU5F1 piR-41195-025 LINC01149 MICA MICB MN298114-200 ENSG00000288587 HCP5
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LINC01149 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for LINC01149 Gene

Genomic Locations for LINC01149 Gene
chr6:31,441,590-31,448,577
(GRCh38/hg38)
Size:
6,988 bases
Orientation:
Plus strand
chr6:31,409,444-31,414,750
(GRCh37/hg19)
Size:
5,307 bases
Orientation:
Plus strand

Genomic View for LINC01149 Gene

Genes around LINC01149 on UCSC Golden Path with GeneCards custom track
LINC01149 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Cytogenetic band:
LINC01149 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC01149 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINC01149 Gene

Proteins for LINC01149 Gene

Post-translational modifications for LINC01149 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC01149 Gene

Domains & Families for LINC01149 Gene

Gene Families for LINC01149 Gene

genes like me logo Genes that share domains with LINC01149: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LINC01149 Gene

Function for LINC01149 Gene

Phenotypes From GWAS Catalog for LINC01149 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC01149 Gene

Localization for LINC01149 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC01149 Gene

Pathways & Interactions for LINC01149 Gene

PathCards logo

SuperPathways for LINC01149 Gene

No Data Available

Gene Ontology (GO) - Biological Process for LINC01149 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for LINC01149 Gene

Drugs & Compounds for LINC01149 Gene

No Compound Related Data Available

Transcripts for LINC01149 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for LINC01149 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS0000212EDA_9606 lncRNA 2141 3

Ensembl: ENST00000430364 (view in UCSC) ,

LNCipedia: LINC01149:2,

NONCODE: NONHSAT108771.2,

URS0000A76761_9606 lncRNA 2141 2

HGNC: 39757,

RefSeq: NR_144465,

URS00008C30B4_9606 lncRNA 2140 2

Ensembl: ENST00000449972 (view in UCSC) ,

NONCODE: NONHSAT118397.2,

URS00008C3645_9606 lncRNA 2139 2

Ensembl: ENST00000413634 (view in UCSC) ,

NONCODE: NONHSAT117408.2,

URS00008C26BD_9606 lncRNA 2135 2

Ensembl: ENST00000414257 (view in UCSC) ,

NONCODE: NONHSAT116707.2,

LINC01149 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for LINC01149 Gene

1 NCBI additional mRNA sequence :

Alternative Splicing Database (ASD) splice patterns (SP) for LINC01149 Gene

No ASD Table

Relevant External Links for LINC01149 Gene

GeneLoc Exon Structure for
LINC01149

Expression for LINC01149 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for LINC01149 Gene

mRNA differential expression in normal tissues according to GTEx for LINC01149 Gene

This gene is overexpressed in Testis (x36.7).

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for LINC01149

genes like me logo Genes that share expression patterns with LINC01149: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC01149 Gene

Orthologs for LINC01149 Gene

Evolution for LINC01149 Gene

ENSEMBL:
Gene Tree for LINC01149 (if available)
TreeFam:
Gene Tree for LINC01149 (if available)

No data available for Orthologs for LINC01149 Gene

Paralogs for LINC01149 Gene

No data available for Paralogs for LINC01149 Gene

Variants for LINC01149 Gene

Additional dbSNP identifiers (rs#s) for LINC01149 Gene

Additional Variant Information for LINC01149 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC01149

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for LINC01149 Gene

Disorders for LINC01149 Gene

No disorders were found for LINC01149 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LINC01149 Gene

Publications for LINC01149 Gene

  1. Identification of novel germline polymorphisms governing capecitabine sensitivity. (PMID: 22864933) O'Donnell PH … Dolan ME (Cancer 2012) 3
  2. Genome-wide association study of Stevens-Johnson Syndrome and Toxic Epidermal Necrolysis in Europe. (PMID: 21801394) Génin E … Mockenhaupt M (Orphanet journal of rare diseases 2011) 3
  3. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3

Products for LINC01149 Gene

Sources for LINC01149 Gene