Aliases for LINC01146 Gene

Subcategory (RNA class) for LINC01146 Gene

lncRNA

Number of RNA Genes sources:

3 / 14

Aliases for LINC01146 Gene

  • Long Intergenic Non-Protein Coding RNA 1146 2 3 5
  • LINC01146 2 168
  • HSALNG0103023 167
  • NONHSAG015652 92
  • NONHSAG015653 92

External Ids for LINC01146 Gene

Previous GeneCards Identifiers for LINC01146 Gene

  • GC14P088493

Summaries for LINC01146 Gene

GeneCards Summary for LINC01146 Gene

LINC01146 (Long Intergenic Non-Protein Coding RNA 1146) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for LINC01146 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LINC01146 Gene

Genomics for LINC01146 Gene

GeneHancer (GH) Regulatory Elements for LINC01146 Gene

Promoters and enhancers for LINC01146 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH14J088022 Enhancer 1.3 Ensembl ENCODE dbSUPER 500.7 +1.2 1150 5.9 POLR2G PHB2 TCF7 FOXA1 AFF1 TARDBP HES1 CTBP1 SKI TEAD1 LINC01146 piR-36887-009 GALC GPR65 LINC01147
GH14J087897 Enhancer 0.3 Ensembl 4.5 -127.1 -127118 0.8 CTCF FOS GALC LINC01146 ENSG00000258807 SHLD2P2
GH14J088043 Enhancer 1.3 FANTOM5 ENCODE dbSUPER 0.4 +20.6 20623 3.3 EP300 FOXK2 TCF12 NCOR1 KDM6A TCF7 FOXA1 ZBTB25 TGIF2 SMARCC2 GALC GPR65 LINC01147 LINC01146 piR-48222-131
GH14J088029 Enhancer 1 FANTOM5 Ensembl dbSUPER 0.4 +8.2 8181 6.6 ATF2 CREB1 ZNF316 MAFF MAFK PBX2 SPI1 PKNOX1 MAFG MEIS2 GALC GPR65 LINC01147 LINC01146 piR-36887-009
GH14J088039 Enhancer 0.8 FANTOM5 Ensembl dbSUPER 0.4 +16.0 15982 4.6 NFE2 GATA1 FOS NR3C1 EGR1 CBFA2T3 GALC GPR65 LINC01147 LINC01146 piR-48222-131
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LINC01146 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LINC01146 Gene

Genomic Locations for LINC01146 Gene
chr14:88,024,519-88,100,116
(GRCh38/hg38)
Size:
75,598 bases
Orientation:
Plus strand
chr14:88,490,894-88,563,276
(GRCh37/hg19)
Size:
72,383 bases
Orientation:
Plus strand

Genomic View for LINC01146 Gene

Genes around LINC01146 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LINC01146 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC01146 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINC01146 Gene

Proteins for LINC01146 Gene

Post-translational modifications for LINC01146 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC01146 Gene

Domains & Families for LINC01146 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LINC01146 Gene

Function for LINC01146 Gene

Phenotypes From GWAS Catalog for LINC01146 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC01146 Gene

Localization for LINC01146 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC01146 Gene

Pathways & Interactions for LINC01146 Gene

PathCards logo

SuperPathways for LINC01146 Gene

No Data Available
;

Gene Ontology (GO) - Biological Process for LINC01146 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for LINC01146 Gene

Drugs & Compounds for LINC01146 Gene

No Compound Related Data Available

Transcripts for LINC01146 Gene

mRNA/cDNA for LINC01146 Gene

107 RNACentral transcripts :
1 REFSEQ mRNAs :
1 NCBI additional mRNA sequence :
84 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
22 NONCODE transcripts :
23 LncBook transcripts :
24 LNCipedia transcripts :

Alternative Splicing Database (ASD) splice patterns (SP) for LINC01146 Gene

No ASD Table

Relevant External Links for LINC01146 Gene

GeneLoc Exon Structure for
LINC01146

Expression for LINC01146 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for LINC01146 Gene

mRNA differential expression in normal tissues according to GTEx for LINC01146 Gene

This gene is overexpressed in Liver (x37.4) and Prostate (x4.7).

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for LINC01146

genes like me logo Genes that share expression patterns with LINC01146: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC01146 Gene

Orthologs for LINC01146 Gene

Evolution for LINC01146 Gene

ENSEMBL:
Gene Tree for LINC01146 (if available)
TreeFam:
Gene Tree for LINC01146 (if available)

No data available for Orthologs for LINC01146 Gene

Paralogs for LINC01146 Gene

No data available for Paralogs for LINC01146 Gene

Variants for LINC01146 Gene

Additional dbSNP identifiers (rs#s) for LINC01146 Gene

Structural Variations from Database of Genomic Variants (DGV) for LINC01146 Gene

Variant ID Type Subtype PubMed ID
esv3409676 CNV insertion 20981092
nsv1389 CNV deletion 18451855

Additional Variant Information for LINC01146 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC01146

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP and Variation tolerance for LINC01146 Gene

Disorders for LINC01146 Gene

Additional Disease Information for LINC01146

No disorders were found for LINC01146 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LINC01146 Gene

Publications for LINC01146 Gene

  1. Genome-wide genetic and transcriptomic investigation of variation in antibody response to dietary antigens. (PMID: 24962563) Rubicz R … Göring HH (Genetic epidemiology 2014) 3 54
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3 54

Products for LINC01146 Gene

Sources for LINC01146 Gene