Free for academic non-profit institutions. Other users need a Commercial license

Aliases for LINC01143 Gene

Subcategory (RNA class) for LINC01143 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for LINC01143 Gene

  • Long Intergenic Non-Protein Coding RNA 1143 2 3 5

External Ids for LINC01143 Gene

Previous GeneCards Identifiers for LINC01143 Gene

  • GC00U935521

Summaries for LINC01143 Gene

GeneCards Summary for LINC01143 Gene

LINC01143 (Long Intergenic Non-Protein Coding RNA 1143) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for LINC01143 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LINC01143 Gene

Genomics for LINC01143 Gene

GeneHancer (GH) Regulatory Elements for LINC01143 Gene

Promoters and enhancers for LINC01143 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH02I070887 Enhancer 0.7 Ensembl 550.8 +0.0 20 1 SAP130 SUZ12 ARID4B BACH1 SIN3A DMAP1 ZBTB7B ZNF48 ZBTB40 RARA LINC01143 CLEC4F ENSG00000277764
GH02I070871 Enhancer 1.1 Ensembl ENCODE 0.4 -16.1 -16133 0.6 PKNOX1 RB1 ARID4B KLF17 SIN3A ZNF2 ZNF48 RAD21 GLIS2 ZNF143 LINC01143 CD207
GH02I070861 Enhancer 0.8 ENCODE 0.3 -25.9 -25865 0.2 DRAP1 ELF3 SOX13 CTCF RB1 SIN3A ZNF48 RAD21 TEAD3 GATA3 LINC01143 CD207
GH02I070850 Enhancer 0.8 FANTOM5 ENCODE 0.3 -36.2 -36187 1.6 EBF1 BATF ATF2 IRF4 NBN RUNX3 IKZF2 BCLAF1 SPI1 CD207 VAX2 ATP6V1B1 ATP6V1B1-AS1 ADD2 FIGLA LINC01143
GH02I070898 Enhancer 0.5 ENCODE 0.4 +10.7 10735 0.1 SP1 SUZ12 EZH2 ZBTB17 VAX2 ENSG00000277764 LINC01143
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around LINC01143 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LINC01143 Gene

Genomic Locations for LINC01143 Gene
chr2:70,887,871-70,889,984
(GRCh38/hg38)
Size:
2,114 bases
Orientation:
Plus strand

Genomic View for LINC01143 Gene

Genes around LINC01143 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LINC01143 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC01143 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINC01143 Gene

Proteins for LINC01143 Gene

Post-translational modifications for LINC01143 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC01143 Gene

Domains & Families for LINC01143 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LINC01143 Gene

Function for LINC01143 Gene

Phenotypes From GWAS Catalog for LINC01143 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC01143 Gene

Localization for LINC01143 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC01143 Gene

Pathways & Interactions for LINC01143 Gene

SuperPathways for LINC01143 Gene

No Data Available

Interacting Proteins for LINC01143 Gene

Gene Ontology (GO) - Biological Process for LINC01143 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LINC01143 Gene

Drugs & Compounds for LINC01143 Gene

No Compound Related Data Available

Transcripts for LINC01143 Gene

mRNA/cDNA for LINC01143 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for LINC01143 Gene

No ASD Table

Relevant External Links for LINC01143 Gene

GeneLoc Exon Structure for
LINC01143
ECgene alternative splicing isoforms for
LINC01143

Expression for LINC01143 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for LINC01143 Gene

NURSA nuclear receptor signaling pathways regulating expression of LINC01143 Gene:

LINC01143
genes like me logo Genes that share expression patterns with LINC01143: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC01143 Gene

Orthologs for LINC01143 Gene

Evolution for LINC01143 Gene

ENSEMBL:
Gene Tree for LINC01143 (if available)
TreeFam:
Gene Tree for LINC01143 (if available)

No data available for Orthologs for LINC01143 Gene

Paralogs for LINC01143 Gene

No data available for Paralogs for LINC01143 Gene

Variants for LINC01143 Gene

Sequence variations from dbSNP and Humsavar for LINC01143 Gene

SNP ID Clin Chr 02 pos Variation AA Info Type
rs1002226196 -- 70,888,146(+) A/G non_coding_transcript_variant
rs1002577400 -- 70,887,880(+) C/A/G non_coding_transcript_variant
rs1003170068 -- 70,886,734(+) G/A upstream_transcript_variant
rs1003634862 -- 70,886,979(+) T/A upstream_transcript_variant
rs1003802896 -- 70,887,272(+) G/C upstream_transcript_variant

Additional Variant Information for LINC01143 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC01143

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for LINC01143 Gene

Disorders for LINC01143 Gene

Additional Disease Information for LINC01143

No disorders were found for LINC01143 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LINC01143 Gene

Publications for LINC01143 Gene

No publications were found for LINC01143 Gene.

Products for LINC01143 Gene

Sources for LINC01143 Gene

Content
Loading form....