Aliases for LINC01142 Gene

Subcategory (RNA class) for LINC01142 Gene

lncRNA

Number of RNA Genes sources:

3 / 17

Aliases for LINC01142 Gene

  • Long Intergenic Non-Protein Coding RNA 1142 2 3 5
  • LINC01142 2 5 165
  • NONHSAG003430.2 91
  • HSALNG0008370 164

External Ids for LINC01142 Gene

Previous GeneCards Identifiers for LINC01142 Gene

  • GC01M170243

Summaries for LINC01142 Gene

GeneCards Summary for LINC01142 Gene

LINC01142 (Long Intergenic Non-Protein Coding RNA 1142) is an RNA Gene, and is affiliated with the lncRNA class. Diseases associated with LINC01142 include Autosomal Recessive Limb-Girdle Muscular Dystrophy Type 2Q.

Additional gene information for LINC01142 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LINC01142 Gene

Genomics for LINC01142 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for LINC01142 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH01J170273 Enhancer 0.7 Ensembl ENCODE 0.4 +10.2 10174 1.2 BCL11A ARNT IKZF1 POLR2A BATF SMARCA4 BHLHE40 IKZF2 KIFAP3 GORAB piR-61532-024 LINC01142 piR-47628-006 LINC01681 METTL11B
GH01J170308 Enhancer 0.8 Ensembl ENCODE CraniofacialAtlas 0.3 -25.6 -25640 2.6 JUND FOS BHLHE40 MAFK NFE2L2 POLR2A GORAB-AS1 GORAB LINC01142 HAUS4P1 LINC01681 METTL11B
GH01J170314 Enhancer 0.5 FANTOM5 Ensembl 0.3 -30.8 -30824 1 MNT GORAB LINC01142 HAUS4P1 LINC01681 METTL11B
GH01J170306 Enhancer 0.3 Ensembl ENCODE 0.4 -23.4 -23414 1.8 GORAB ENSG00000271811 LINC01142 HAUS4P1 LINC01681 METTL11B
GH01J170305 Enhancer 0.3 Ensembl 0.4 -21.7 -21724 0.4 GATAD2B EBF1 LINC01142 HAUS4P1 LINC01681 METTL11B GORAB
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LINC01142 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for LINC01142 Gene

Genomic Locations for LINC01142 Gene
chr1:170,271,395-170,284,277
(GRCh38/hg38)
Size:
12,883 bases
Orientation:
Minus strand
chr1:170,240,546-170,253,349
(GRCh37/hg19)
Size:
12,804 bases
Orientation:
Minus strand

Genomic View for LINC01142 Gene

Genes around LINC01142 on UCSC Golden Path with GeneCards custom track
LINC01142 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Cytogenetic band:
LINC01142 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC01142 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINC01142 Gene

Proteins for LINC01142 Gene

Post-translational modifications for LINC01142 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC01142 Gene

Domains & Families for LINC01142 Gene

Gene Families for LINC01142 Gene

genes like me logo Genes that share domains with LINC01142: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LINC01142 Gene

Function for LINC01142 Gene

Phenotypes From GWAS Catalog for LINC01142 Gene

Animal Model Products

CRISPR Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC01142 Gene

Localization for LINC01142 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC01142 Gene

Pathways & Interactions for LINC01142 Gene

PathCards logo

SuperPathways for LINC01142 Gene

No Data Available

Gene Ontology (GO) - Biological Process for LINC01142 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for LINC01142 Gene

Drugs & Compounds for LINC01142 Gene

No Compound Related Data Available

Transcripts for LINC01142 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for LINC01142 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS00003F31C9_9606 lncRNA 388 4

Ensembl: ENST00000451439 (view in UCSC) ,

LncBook: HSALNT0017322,

LNCipedia: LINC01142:2,

NONCODE: NONHSAT007496.2,

URS000075A610_9606 lncRNA 1725 2

HGNC: 49456,

RefSeq: NR_026957,

URS0000EF2778_9606 lncRNA 1804 1

Ensembl: ENST00000440404 (view in UCSC) ,

URS00008B6ADF_9606 lncRNA 1725 2

LNCipedia: LINC01142:3,

NONCODE: NONHSAT007495.2,

URS00008B73BD_9606 lncRNA 1724 2

LncBook: HSALNT0017318,

LNCipedia: LINC01142:1,

LINC01142 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for LINC01142 Gene

5 NCBI additional mRNA sequence :

CRISPR Products

Alternative Splicing Database (ASD) splice patterns (SP) for LINC01142 Gene

No ASD Table

Relevant External Links for LINC01142 Gene

GeneLoc Exon Structure for
LINC01142

Expression for LINC01142 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for LINC01142 Gene

mRNA differential expression in normal tissues according to GTEx for LINC01142 Gene

This gene is overexpressed in Testis (x28.4) and Adipose - Subcutaneous (x5.4).

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for LINC01142

genes like me logo Genes that share expression patterns with LINC01142: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC01142 Gene

Orthologs for LINC01142 Gene

Evolution for LINC01142 Gene

ENSEMBL:
Gene Tree for LINC01142 (if available)
TreeFam:
Gene Tree for LINC01142 (if available)

No data available for Orthologs for LINC01142 Gene

Paralogs for LINC01142 Gene

No data available for Paralogs for LINC01142 Gene

Variants for LINC01142 Gene

Additional dbSNP identifiers (rs#s) for LINC01142 Gene

Structural Variations from Database of Genomic Variants (DGV) for LINC01142 Gene

Variant ID Type Subtype PubMed ID
nsv1078878 OTHER inversion 25765185
nsv1139509 CNV duplication 24896259

Additional Variant Information for LINC01142 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC01142

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP and Variation tolerance for LINC01142 Gene

Disorders for LINC01142 Gene

MalaCards: The human disease database

(1) MalaCards diseases for LINC01142 Gene - From: DISEASES

Disorder Aliases PubMed IDs
autosomal recessive limb-girdle muscular dystrophy type 2q
  • muscular dystrophy, limb-girdle, type 2q
- elite association - COSMIC cancer census association via MalaCards

Additional Disease Information for LINC01142

genes like me logo Genes that share disorders with LINC01142: view

No data available for UniProtKB/Swiss-Prot and Genatlas for LINC01142 Gene

Publications for LINC01142 Gene

  1. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K … Sugano S (Genome research 2006) 3
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3

Products for LINC01142 Gene

Sources for LINC01142 Gene