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Aliases for LINC01141 Gene

Subcategory (RNA class) for LINC01141 Gene

non-coding RNA

Quality Score for this RNA gene is

13

Aliases for LINC01141 Gene

  • Long Intergenic Non-Protein Coding RNA 1141 2 3 5

External Ids for LINC01141 Gene

Previous GeneCards Identifiers for LINC01141 Gene

  • GC01M020690

Summaries for LINC01141 Gene

GeneCards Summary for LINC01141 Gene

LINC01141 (Long Intergenic Non-Protein Coding RNA 1141) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for LINC01141 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LINC01141 Gene

Genomics for LINC01141 Gene

GeneHancer (GH) Regulatory Elements for LINC01141 Gene

Promoters and enhancers for LINC01141 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH01J020428 Enhancer 0.9 Ensembl dbSUPER 600.7 -0.4 -367 5.6 CC2D1A CTCF ZNF384 PRDM1 RAD21 GLIS2 ZBTB33 ARID2 IKZF1 RFX1 LINC01141 MUL1 ENSG00000226664 VWA5B1 CAMK2N1 ENSG00000231105 PINK1 ENSG00000284641
GH01J020357 Enhancer 0.8 ENCODE 6.5 +72.6 72610 1.5 NFIB SP1 SP5 RXRA ZNF600 PRDM10 GATAD2A REST FOXA2 KLF9 LINC01141 GC01P020350 PIR44198 VWA5B1
GH01J020426 Enhancer 1 Ensembl ENCODE dbSUPER 0.7 +4.1 4111 1.4 PRDM1 SCRT2 FOS FOSL1 JUNB FOSL2 ZNF335 IRF4 BATF JUND LINC01141 ENSG00000226487
GH01J020410 Enhancer 1.1 Ensembl ENCODE dbSUPER 0.4 +19.9 19945 1.4 CSDE1 SP7 GLIS2 RFX1 ZIC2 ZEB2 ZNF629 PATZ1 ZNF692 BMI1 ENSG00000226487 PIR44198 LINC01141
GH01J020440 Enhancer 1 Ensembl dbSUPER 0.4 -9.7 -9742 0.8 SP1 SIX5 CBFA2T2 PRDM10 ZNF143 REST IRF2 NRF1 MNT RAD51 CAMK2N1 MUL1 ENSG00000226664 LINC01141 ENSG00000284641
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LINC01141 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LINC01141 Gene

Genomic Locations for LINC01141 Gene
chr1:20,359,801-20,431,234
(GRCh38/hg38)
Size:
71,434 bases
Orientation:
Minus strand
chr1:20,686,294-20,757,727
(GRCh37/hg19)
Size:
71,434 bases
Orientation:
Minus strand

Genomic View for LINC01141 Gene

Genes around LINC01141 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LINC01141 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC01141 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINC01141 Gene

Proteins for LINC01141 Gene

Post-translational modifications for LINC01141 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC01141 Gene

Domains & Families for LINC01141 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LINC01141 Gene

Function for LINC01141 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC01141 Gene

Localization for LINC01141 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC01141 Gene

Pathways & Interactions for LINC01141 Gene

PathCards logo

SuperPathways for LINC01141 Gene

No Data Available

Interacting Proteins for LINC01141 Gene

Gene Ontology (GO) - Biological Process for LINC01141 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LINC01141 Gene

Drugs & Compounds for LINC01141 Gene

No Compound Related Data Available

Transcripts for LINC01141 Gene

mRNA/cDNA for LINC01141 Gene

(4) Additional mRNA sequences :
(12) Selected AceView cDNA sequences:
(5) Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
(6) RNA Central transcripts :

Alternative Splicing Database (ASD) splice patterns (SP) for LINC01141 Gene

No ASD Table

Relevant External Links for LINC01141 Gene

GeneLoc Exon Structure for
LINC01141
ECgene alternative splicing isoforms for
LINC01141

Expression for LINC01141 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for LINC01141 Gene

mRNA differential expression in normal tissues according to GTEx for LINC01141 Gene

This gene is overexpressed in Testis (x8.6), Brain - Spinal cord (cervical c-1) (x7.7), Brain - Substantia nigra (x5.2), and Brain - Amygdala (x4.4).

NURSA nuclear receptor signaling pathways regulating expression of LINC01141 Gene:

LINC01141
genes like me logo Genes that share expression patterns with LINC01141: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC01141 Gene

Orthologs for LINC01141 Gene

Evolution for LINC01141 Gene

ENSEMBL:
Gene Tree for LINC01141 (if available)
TreeFam:
Gene Tree for LINC01141 (if available)

No data available for Orthologs for LINC01141 Gene

Paralogs for LINC01141 Gene

No data available for Paralogs for LINC01141 Gene

Variants for LINC01141 Gene

Sequence variations from dbSNP and Humsavar for LINC01141 Gene

SNP ID Clin Chr 01 pos Variation AA Info Type
rs1000036146 -- 20,426,035(-) G/T intron_variant
rs1000128415 -- 20,378,085(-) C/G intron_variant
rs1000283493 -- 20,396,854(-) C/T intron_variant
rs1000312144 -- 20,412,689(-) T/A intron_variant
rs1000431554 -- 20,425,626(-) A/G intron_variant

Structural Variations from Database of Genomic Variants (DGV) for LINC01141 Gene

Variant ID Type Subtype PubMed ID
esv2513498 CNV insertion 19546169
esv3347293 CNV duplication 20981092
esv3585420 CNV gain 21293372
nsv1140109 CNV insertion 24896259
nsv545731 CNV gain 21841781
nsv5631 CNV insertion 18451855

Additional Variant Information for LINC01141 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC01141

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for LINC01141 Gene

Disorders for LINC01141 Gene

Additional Disease Information for LINC01141

No disorders were found for LINC01141 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LINC01141 Gene

Publications for LINC01141 Gene

  1. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K … Sugano S (Genome research 2006) 3 58
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3 58

No data available for External Links for LINC01141 Gene

Products for LINC01141 Gene

Sources for LINC01141 Gene

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