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Aliases for LINC01140 Gene

Subcategory (RNA class) for LINC01140 Gene

non-coding RNA

Quality Score for this RNA gene is

13

Aliases for LINC01140 Gene

  • Long Intergenic Non-Protein Coding RNA 1140 2 3 5

External Ids for LINC01140 Gene

Previous GeneCards Identifiers for LINC01140 Gene

  • GC01P087599

Summaries for LINC01140 Gene

GeneCards Summary for LINC01140 Gene

LINC01140 (Long Intergenic Non-Protein Coding RNA 1140) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for LINC01140 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LINC01140 Gene

Genomics for LINC01140 Gene

GeneHancer (GH) Regulatory Elements for LINC01140 Gene

Promoters and enhancers for LINC01140 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH01J087129 Enhancer 0.3 ENCODE 650.7 0.0 -42 0.1 CEBPB GC01M087128 LINC01140 GC01P087094 ENSG00000267561
GH01J087131 Promoter/Enhancer 1.3 Ensembl ENCODE 7.5 +2.3 2309 1.6 HDGF ELF3 RB1 INSM2 ARID4B KLF17 SIN3A ZNF2 ZNF48 RAD21 ODF2L LINC01140 LMO4 GC01M087128 GC01M087175 ENSG00000267561
GH01J087148 Enhancer 1.1 UCNEbase Ensembl ENCODE 6.1 +19.8 19796 1.9 ZNF335 NANOG POLR2A RCOR1 SPI1 LINC01140 GC01M087128 GC01M087175 ENSG00000267561
GH01J087223 Enhancer 1.2 FANTOM5 Ensembl ENCODE 5.5 +95.7 95732 3.7 ELF3 ETS1 FOS IKZF2 RXRA CEBPB ELF1 NR2F2 NFIL3 SP1 LINC01140 HS2ST1 LMO4 LOC101927844 GC01P087235
GH01J087140 Enhancer 0.3 ENCODE 7.4 +11.5 11468 1.7 RFX1 LINC01140 GC01M087128 GC01M087175 ENSG00000267561
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around LINC01140 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LINC01140 Gene

Genomic Locations for LINC01140 Gene
chr1:87,129,765-87,169,204
(GRCh38/hg38)
Size:
39,440 bases
Orientation:
Plus strand
chr1:87,595,448-87,634,887
(GRCh37/hg19)
Size:
39,440 bases
Orientation:
Plus strand

Genomic View for LINC01140 Gene

Genes around LINC01140 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LINC01140 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC01140 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINC01140 Gene

Proteins for LINC01140 Gene

Post-translational modifications for LINC01140 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC01140 Gene

Domains & Families for LINC01140 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LINC01140 Gene

Function for LINC01140 Gene

Phenotypes From GWAS Catalog for LINC01140 Gene

Animal Model Products

CRISPR Products

Inhibitory RNA Products

  • Search GeneCopoeia for shRNA, lentivirus and/or AAV clone products for LINC01140

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC01140 Gene

Localization for LINC01140 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC01140 Gene

Pathways & Interactions for LINC01140 Gene

SuperPathways for LINC01140 Gene

No Data Available

Interacting Proteins for LINC01140 Gene

Gene Ontology (GO) - Biological Process for LINC01140 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LINC01140 Gene

Drugs & Compounds for LINC01140 Gene

No Compound Related Data Available

Transcripts for LINC01140 Gene

mRNA/cDNA for LINC01140 Gene

(1) REFSEQ mRNAs :
(2) Selected AceView cDNA sequences:
(11) Ensembl transcripts including schematic representations, and UCSC links where relevant :
(16) RNA Central transcripts :

CRISPR Products

Inhibitory RNA Products

  • Search GeneCopoeia for shRNA, lentivirus and/or AAV clone products for LINC01140

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for LINC01140 Gene

No ASD Table

Relevant External Links for LINC01140 Gene

GeneLoc Exon Structure for
LINC01140
ECgene alternative splicing isoforms for
LINC01140

Expression for LINC01140 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for LINC01140 Gene

mRNA differential expression in normal tissues according to GTEx for LINC01140 Gene

This gene is overexpressed in Adipose - Subcutaneous (x5.3), Heart - Atrial Appendage (x4.9), and Adipose - Visceral (Omentum) (x4.1).

NURSA nuclear receptor signaling pathways regulating expression of LINC01140 Gene:

LINC01140
genes like me logo Genes that share expression patterns with LINC01140: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC01140 Gene

Orthologs for LINC01140 Gene

Evolution for LINC01140 Gene

ENSEMBL:
Gene Tree for LINC01140 (if available)
TreeFam:
Gene Tree for LINC01140 (if available)

No data available for Orthologs for LINC01140 Gene

Paralogs for LINC01140 Gene

No data available for Paralogs for LINC01140 Gene

Variants for LINC01140 Gene

Sequence variations from dbSNP and Humsavar for LINC01140 Gene

SNP ID Clin Chr 01 pos Variation AA Info Type
rs1000037112 -- 87,139,945(+) G/A genic_downstream_transcript_variant, intron_variant
rs1000102451 -- 87,147,089(+) A/T genic_downstream_transcript_variant, intron_variant
rs1000183431 -- 87,166,739(+) A/G genic_downstream_transcript_variant, intron_variant
rs1000209100 -- 87,130,852(+) A/C genic_upstream_transcript_variant, intron_variant, upstream_transcript_variant
rs1000229243 -- 87,165,843(+) T/C genic_downstream_transcript_variant, intron_variant

Structural Variations from Database of Genomic Variants (DGV) for LINC01140 Gene

Variant ID Type Subtype PubMed ID
esv23870 CNV gain 19812545
nsv1788 CNV insertion 18451855
nsv437812 CNV loss 16327808

Additional Variant Information for LINC01140 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC01140

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for LINC01140 Gene

Disorders for LINC01140 Gene

Additional Disease Information for LINC01140

No disorders were found for LINC01140 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LINC01140 Gene

Publications for LINC01140 Gene

  1. A three-lncRNA expression signature associated with the prognosis of gastric cancer patients. (PMID: 28444881) Song P … Guan W (Cancer medicine 2017) 2 3 58
  2. Genome-wide and candidate gene association study of cigarette smoking behaviors. (PMID: 19247474) Caporaso N … Bergen AW (PloS one 2009) 3 58
  3. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K … Sugano S (Genome research 2006) 3 58
  4. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3 58
  5. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3 58

Products for LINC01140 Gene

Sources for LINC01140 Gene

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