Aliases for LINC01137 Gene

Subcategory (RNA class) for LINC01137 Gene

lncRNA

Number of RNA Genes sources:

3 / 14

Aliases for LINC01137 Gene

  • Long Intergenic Non-Protein Coding RNA 1137 2 3 5
  • LINC01137 2 168
  • HSALNG0002618 167
  • NONHSAG001064 92

External Ids for LINC01137 Gene

Previous GeneCards Identifiers for LINC01137 Gene

  • GC01M037924
  • GC01M037454

Summaries for LINC01137 Gene

GeneCards Summary for LINC01137 Gene

LINC01137 (Long Intergenic Non-Protein Coding RNA 1137) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for LINC01137 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LINC01137 Gene

Genomics for LINC01137 Gene

GeneHancer (GH) Regulatory Elements for LINC01137 Gene

Promoters and enhancers for LINC01137 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH01J037470 Promoter/Enhancer 2.5 EPDnew FANTOM5 Ensembl ENCODE CraniofacialAtlas dbSUPER 44.2 -4.9 -4857 18.3 FOXK2 HNRNPK ZBTB40 ZNF217 CTCF SIN3A NRF1 TCF12 POLR2G USF1 ZC3H12A MIR6732 piR-41114 LINC01137 MTF1 GNL2 DNALI1 MEAF6 SNIP1 YRDC
GH01J037464 Enhancer 1.2 FANTOM5 Ensembl ENCODE dbSUPER 34.7 +8.7 8697 3 REST RBM25 ZNF316 MAFF MAFK GATA3 MAFG ZNF584 ID3 CREM LINC01137 lnc-MEAF6-4 piR-56480-002
GH01J037454 Enhancer 1.1 ENCODE dbSUPER 36.4 +19.2 19239 1.7 ZNF217 CTCF TCF12 POLR2A TARDBP REST TOE1 RAD21 CTBP1 EP300 LINC01137 piR-56480-002 lnc-MEAF6-4
GH01J037451 Enhancer 0.9 Ensembl ENCODE dbSUPER 34 +21.9 21864 1.8 HNRNPK FOS ETS1 FOSL1 JUND SP1 EGR1 POU5F1 IKZF1 REST piR-56480-002 LINC01137 ZC3H12A DNALI1 ENSG00000237749 SNIP1 RSPO1 lnc-MEAF6-4
GH01J037496 Enhancer 1.3 UCNEbase Ensembl ENCODE dbSUPER 17.7 -23.8 -23794 3.8 TCF12 ZNF10 MXI1 NFIC FOSL2 ATF3 NR3C1 JUND ZBTB48 RFX5 DNALI1 LINC01137 GNL2 MEAF6 ZC3H12A ENSG00000237749 SNIP1 C1orf109 CDCA8 EPHA10
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LINC01137 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LINC01137 Gene

Genomic Locations for LINC01137 Gene
chr1:37,350,934-37,474,506
(GRCh38/hg38)
Size:
123,573 bases
Orientation:
Minus strand
chr1:37,920,480-37,940,044
(GRCh37/hg19)
Size:
19,565 bases
Orientation:
Minus strand

Genomic View for LINC01137 Gene

Genes around LINC01137 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LINC01137 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC01137 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINC01137 Gene

Proteins for LINC01137 Gene

Post-translational modifications for LINC01137 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC01137 Gene

Domains & Families for LINC01137 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LINC01137 Gene

Function for LINC01137 Gene

Phenotypes From GWAS Catalog for LINC01137 Gene

Phenotypes for LINC01137 Gene

genes like me logo Genes that share phenotypes with LINC01137: view

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC01137 Gene

Localization for LINC01137 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC01137 Gene

Pathways & Interactions for LINC01137 Gene

PathCards logo

SuperPathways for LINC01137 Gene

No Data Available
;

Gene Ontology (GO) - Biological Process for LINC01137 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for LINC01137 Gene

Drugs & Compounds for LINC01137 Gene

No Compound Related Data Available

Transcripts for LINC01137 Gene

mRNA/cDNA for LINC01137 Gene

15 RNACentral transcripts :
1 REFSEQ mRNAs :
4 NCBI additional mRNA sequence :
2 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
2 NONCODE transcripts :
11 LncBook transcripts :
12 LNCipedia transcripts :

Alternative Splicing Database (ASD) splice patterns (SP) for LINC01137 Gene

No ASD Table

Relevant External Links for LINC01137 Gene

GeneLoc Exon Structure for
LINC01137

Expression for LINC01137 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for LINC01137 Gene

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for LINC01137

genes like me logo Genes that share expression patterns with LINC01137: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC01137 Gene

Orthologs for LINC01137 Gene

Evolution for LINC01137 Gene

ENSEMBL:
Gene Tree for LINC01137 (if available)
TreeFam:
Gene Tree for LINC01137 (if available)

No data available for Orthologs for LINC01137 Gene

Paralogs for LINC01137 Gene

No data available for Paralogs for LINC01137 Gene

Variants for LINC01137 Gene

Additional dbSNP identifiers (rs#s) for LINC01137 Gene

Structural Variations from Database of Genomic Variants (DGV) for LINC01137 Gene

Variant ID Type Subtype PubMed ID
esv2670000 CNV deletion 23128226
esv3585752 CNV loss 21293372

Additional Variant Information for LINC01137 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC01137

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP and Variation tolerance for LINC01137 Gene

Disorders for LINC01137 Gene

Additional Disease Information for LINC01137

No disorders were found for LINC01137 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LINC01137 Gene

Publications for LINC01137 Gene

  1. The lncRNA DRAIC/PCAT29 Locus Constitutes a Tumor-Suppressive Nexus. (PMID: 25700553) Sakurai K … Dutta A (Molecular cancer research : MCR 2015) 2 3 54
  2. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K … Sugano S (Genome research 2006) 3 54
  3. Normalization and subtraction: two approaches to facilitate gene discovery. (PMID: 8889548) Bonaldo MF … Soares MB (Genome research 1996) 3 54

Products for LINC01137 Gene

Sources for LINC01137 Gene