Aliases for LINC01135 Gene

Subcategory (RNA class) for LINC01135 Gene

lncRNA

Number of RNA Genes sources:

3 / 14

Aliases for LINC01135 Gene

  • Long Intergenic Non-Protein Coding RNA 1135 2 3 5
  • LINC01135 2 168
  • HSALNG0003956 167
  • NONHSAG001622 92

External Ids for LINC01135 Gene

Previous GeneCards Identifiers for LINC01135 Gene

  • GC01P059253

Summaries for LINC01135 Gene

GeneCards Summary for LINC01135 Gene

LINC01135 (Long Intergenic Non-Protein Coding RNA 1135) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for LINC01135 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LINC01135 Gene

Genomics for LINC01135 Gene

GeneHancer (GH) Regulatory Elements for LINC01135 Gene

Promoters and enhancers for LINC01135 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH01J058779 Promoter/Enhancer 2.4 EPDnew Ensembl ENCODE CraniofacialAtlas dbSUPER 515.9 -1.1 -1101 8 EP300 ZBTB40 CTCF TCF12 ZSCAN5C SIN3A NRF1 POLR2G SP1 NCOR1 LINC01135 JUN MYSM1 ENSG00000272226 FGGY LOC105378751
GH01J058894 Promoter/Enhancer 2.4 FANTOM5 Ensembl ENCODE CraniofacialAtlas dbSUPER 16.9 +116.0 115972 10.5 FOXK2 NRF1 POLR2G NCOR1 GTF2E2 PHF8 PHB2 ZFX ZIC2 REST LINC01135 JUN FGGY LINC02777 piR-35650 LINC01358 lnc-JUN-12
GH01J058880 Promoter/Enhancer 1.8 FANTOM5 Ensembl ENCODE dbSUPER 15.8 +100.1 100100 7 EP300 FOXK2 ZSCAN5C TCF12 NRF1 NCOR1 GTF2E2 JUND FOS PHB2 LINC01135 FGGY JUN LINC02777 RF00994-017 piR-35650
GH01J058854 Enhancer 1.2 Ensembl ENCODE dbSUPER 23.6 +73.2 73239 9.8 ZSCAN5C TCF7 REST RELA POLR2A NFYB RBM25 ZNF148 NCOR1 SALL2 LINC01135 JUN ENSG00000272226 lnc-JUN-9 ENSG00000231740
GH01J058812 Promoter/Enhancer 2.4 FANTOM5 Ensembl ENCODE CraniofacialAtlas dbSUPER 11.6 +32.0 32047 7.8 ZSCAN5C TCF12 NRF1 POLR2G SP1 GTF2E2 JUND PHF8 FOS TEAD4 piR-44219 JUN LINC01135 FGGY MYSM1 ENSG00000272226 LOC101926907 lnc-JUN-8
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LINC01135 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LINC01135 Gene

Genomic Locations for LINC01135 Gene
chr1:58,784,262-58,901,455
(GRCh38/hg38)
Size:
117,194 bases
Orientation:
Plus strand
chr1:59,250,823-59,365,384
(GRCh37/hg19)
Size:
114,562 bases
Orientation:
Plus strand

Genomic View for LINC01135 Gene

Genes around LINC01135 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LINC01135 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC01135 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINC01135 Gene

Proteins for LINC01135 Gene

Post-translational modifications for LINC01135 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC01135 Gene

Domains & Families for LINC01135 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LINC01135 Gene

Function for LINC01135 Gene

Phenotypes From GWAS Catalog for LINC01135 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC01135 Gene

Localization for LINC01135 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC01135 Gene

Pathways & Interactions for LINC01135 Gene

PathCards logo

SuperPathways for LINC01135 Gene

No Data Available
;

Gene Ontology (GO) - Biological Process for LINC01135 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for LINC01135 Gene

Drugs & Compounds for LINC01135 Gene

No Compound Related Data Available

Transcripts for LINC01135 Gene

mRNA/cDNA for LINC01135 Gene

33 RNACentral transcripts :
3 REFSEQ mRNAs :
4 NCBI additional mRNA sequence :
5 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
8 NONCODE transcripts :
22 LncBook transcripts :
28 LNCipedia transcripts :

Alternative Splicing Database (ASD) splice patterns (SP) for LINC01135 Gene

No ASD Table

Relevant External Links for LINC01135 Gene

GeneLoc Exon Structure for
LINC01135

Expression for LINC01135 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for LINC01135 Gene

mRNA differential expression in normal tissues according to GTEx for LINC01135 Gene

This gene is overexpressed in Brain - Spinal cord (cervical c-1) (x5.0).

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for LINC01135

genes like me logo Genes that share expression patterns with LINC01135: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC01135 Gene

Orthologs for LINC01135 Gene

Evolution for LINC01135 Gene

ENSEMBL:
Gene Tree for LINC01135 (if available)
TreeFam:
Gene Tree for LINC01135 (if available)

No data available for Orthologs for LINC01135 Gene

Paralogs for LINC01135 Gene

No data available for Paralogs for LINC01135 Gene

Variants for LINC01135 Gene

Additional dbSNP identifiers (rs#s) for LINC01135 Gene

Structural Variations from Database of Genomic Variants (DGV) for LINC01135 Gene

Variant ID Type Subtype PubMed ID
esv3420573 CNV insertion 20981092
nsv1005354 CNV gain 25217958
nsv1014087 CNV gain 25217958
nsv829959 CNV gain 17160897

Additional Variant Information for LINC01135 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC01135

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP and Variation tolerance for LINC01135 Gene

Disorders for LINC01135 Gene

Additional Disease Information for LINC01135

No disorders were found for LINC01135 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LINC01135 Gene

Publications for LINC01135 Gene

  1. A genome-wide study of common SNPs and CNVs in cognitive performance in the CANTAB. (PMID: 19734545) Need AC … Goldstein DB (Human molecular genetics 2009) 3 54
  2. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K … Sugano S (Genome research 2006) 3 54
  3. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3 54

Products for LINC01135 Gene

Sources for LINC01135 Gene