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Aliases for LINC01133 Gene

Subcategory (RNA class) for LINC01133 Gene

non-coding RNA

Quality Score for this RNA gene is

13

Aliases for LINC01133 Gene

  • Long Intergenic Non-Protein Coding RNA 1133 2 3 5
  • Prognosis-Associated Gallbladder Cancer LncRNA 2 3
  • LncRNA-PAGBC 3

External Ids for LINC01133 Gene

Summaries for LINC01133 Gene

GeneCards Summary for LINC01133 Gene

LINC01133 (Long Intergenic Non-Protein Coding RNA 1133) is an RNA Gene, and is affiliated with the non-coding RNA class. Diseases associated with LINC01133 include Cervical Squamous Cell Carcinoma and Gallbladder Cancer.

Additional gene information for LINC01133 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LINC01133 Gene

Genomics for LINC01133 Gene

GeneHancer (GH) Regulatory Elements for LINC01133 Gene

Promoters and enhancers for LINC01133 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH01J159960 Promoter/Enhancer 0.9 Ensembl ENCODE 609.9 +0.4 364 2.4 ADNP IKZF1 KLF1 LINC01133 ENSG00000212161 ENSG00000225279 DUSP23 FCRL6 FCRL6P1
GH01J159959 Enhancer 0.6 ENCODE 600.7 -1.7 -1728 0.9 IKZF1 CREB1 CTBP1 SCRT2 PKNOX1 ZNF592 ZNF217 IRF4 ZNF687 ATF2 LINC01133 ENSG00000212161 ENSG00000225279 DUSP23 FCRL6 SLAMF9
GH01J160283 Promoter/Enhancer 2 EPDnew Ensembl ENCODE 13.9 +323.2 323224 2.7 MTA3 ZNF652 SP1 MNT NKRF POLR2A CEBPG GTF2F1 NFRKB YY1 ENSG00000258465 PEX19 NHLH1 DCAF8 LINC01133 COPA RPSAP18
GH01J160703 Promoter/Enhancer 2.3 EPDnew FANTOM5 Ensembl ENCODE dbSUPER 10.5 +748.3 748323 11.8 SP1 NKRF ZNF687 RELA CREM MLLT1 ZNF680 IKZF1 POLR2A BACH1 CD48 SLAMF7 CD244 NCSTN DEDD ENSG00000228863 SLAMF1 LY9 LINC01133 ENSG00000256029
GH01J160341 Promoter/Enhancer 2.1 EPDnew Ensembl ENCODE 10.6 +381.6 381619 3.7 ZFX CC2D1A ELF3 NKRF POLR2A MLLT1 CEBPG RERE GTF2F1 ZNF687 NCSTN COPA SNHG28 RPSAP18 ENSG00000272668 USP21 ENSG00000228606 DEDD PPOX B4GALT3
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LINC01133 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LINC01133 Gene

Genomic Locations for LINC01133 Gene
chr1:159,961,218-159,984,750
(GRCh38/hg38)
Size:
23,533 bases
Orientation:
Plus strand
chr1:159,931,008-159,948,876
(GRCh37/hg19)
Size:
17,869 bases
Orientation:
Plus strand

Genomic View for LINC01133 Gene

Genes around LINC01133 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LINC01133 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC01133 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINC01133 Gene

Proteins for LINC01133 Gene

Post-translational modifications for LINC01133 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC01133 Gene

Domains & Families for LINC01133 Gene

Gene Families for LINC01133 Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with LINC01133: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LINC01133 Gene

Function for LINC01133 Gene

Phenotypes From GWAS Catalog for LINC01133 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC01133 Gene

Localization for LINC01133 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC01133 Gene

Pathways & Interactions for LINC01133 Gene

PathCards logo

SuperPathways for LINC01133 Gene

No Data Available

Interacting Proteins for LINC01133 Gene

Gene Ontology (GO) - Biological Process for LINC01133 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LINC01133 Gene

Drugs & Compounds for LINC01133 Gene

No Compound Related Data Available

Transcripts for LINC01133 Gene

mRNA/cDNA for LINC01133 Gene

(5) Additional mRNA sequences :
(3) Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
(4) RNA Central transcripts :

Alternative Splicing Database (ASD) splice patterns (SP) for LINC01133 Gene

No ASD Table

Relevant External Links for LINC01133 Gene

GeneLoc Exon Structure for
LINC01133
ECgene alternative splicing isoforms for
LINC01133

Expression for LINC01133 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for LINC01133 Gene

mRNA differential expression in normal tissues according to GTEx for LINC01133 Gene

This gene is overexpressed in Colon - Transverse (x7.7), Stomach (x5.3), Small Intestine - Terminal Ileum (x5.2), and Esophagus - Mucosa (x5.2).

NURSA nuclear receptor signaling pathways regulating expression of LINC01133 Gene:

LINC01133
genes like me logo Genes that share expression patterns with LINC01133: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC01133 Gene

Orthologs for LINC01133 Gene

Evolution for LINC01133 Gene

ENSEMBL:
Gene Tree for LINC01133 (if available)
TreeFam:
Gene Tree for LINC01133 (if available)

No data available for Orthologs for LINC01133 Gene

Paralogs for LINC01133 Gene

No data available for Paralogs for LINC01133 Gene

Variants for LINC01133 Gene

Sequence variations from dbSNP and Humsavar for LINC01133 Gene

SNP ID Clin Chr 01 pos Variation AA Info Type
rs1000359271 -- 159,961,602(+) A/C intron_variant
rs1000479770 -- 159,967,669(+) G/A intron_variant
rs1000774280 -- 159,961,794(+) T/C intron_variant
rs1000806497 -- 159,966,331(+) T/A intron_variant
rs1000906109 -- 159,968,865(+) A/T intron_variant

Structural Variations from Database of Genomic Variants (DGV) for LINC01133 Gene

Variant ID Type Subtype PubMed ID
esv2718729 CNV deletion 23290073
esv3541511 CNV deletion 23714750
esv3578219 CNV loss 25503493
esv3587705 CNV loss 21293372
nsv1137816 CNV deletion 24896259
nsv159498 CNV deletion 16902084
nsv520773 CNV loss 19592680
nsv548055 CNV loss 21841781
nsv946452 CNV duplication 23825009

Additional Variant Information for LINC01133 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC01133

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for LINC01133 Gene

Disorders for LINC01133 Gene

MalaCards: The human disease database

(5) MalaCards diseases for LINC01133 Gene - From: LncRNADisease, DISEASES, and GeneCards

Disorder Aliases PubMed IDs
cervical squamous cell carcinoma
  • squamous cell carcinoma of cervix
gallbladder cancer
  • gallbladder ca
lung squamous cell carcinoma
  • epidermoid cell carcinoma of the lung
lung cancer
  • adenocarcinoma of lung
colorectal cancer
  • crc
- elite association - COSMIC cancer census association via MalaCards

Additional Disease Information for LINC01133

genes like me logo Genes that share disorders with LINC01133: view

No data available for UniProtKB/Swiss-Prot and Genatlas for LINC01133 Gene

Publications for LINC01133 Gene

  1. Long Noncoding RNA LINC01133 Functions as an miR-422a Sponge to Aggravate the Tumorigenesis of Human Osteosarcoma. (PMID: 28390115) Zeng HF … Feng FB (Oncology research 2018) 2 3 58
  2. LncRNA-PAGBC acts as a microRNA sponge and promotes gallbladder tumorigenesis. (PMID: 28887321) Wu XS … Liu YB (EMBO reports 2017) 2 3 58
  3. A novel long noncoding RNA LINC01133 is upregulated in lung squamous cell cancer and predicts survival. (PMID: 25908174) Zhang J … Chen X (Tumour biology : the journal of the International Society for Oncodevelopmental Biology and Medicine 2015) 2 3 58
  4. The C/EBPβ-LINC01133 axis promotes cell proliferation in pancreatic ductal adenocarcinoma through upregulation of CCNG1. (PMID: 29458145) Huang CS … Yin XY (Cancer letters 2018) 3 58
  5. Tissue-Specific Down-Regulation of the Long Non-Coding RNAs PCAT18 and LINC01133 in Gastric Cancer Development. (PMID: 30518158) Foroughi K … Manoochehri M (International journal of molecular sciences 2018) 3 58

Products for LINC01133 Gene

Sources for LINC01133 Gene

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