LINC01128 Gene (RNA Gene)

Long Intergenic Non-Protein Coding RNA 1128

GC01P001452
GIFtS:
14
See more...

Aliases for LINC01128 Gene

Subcategory (RNA class) for LINC01128 Gene

lncRNA

Number of RNA Genes sources:

4 / 17

Aliases for LINC01128 Gene

  • Long Intergenic Non-Protein Coding RNA 1128 2 3 5
  • LINC01128 2 5 165
  • NONHSAG000047.2 91
  • HSALNG0000041 164
  • FAM87B 165

External Ids for LINC01128 Gene

Previous GeneCards Identifiers for LINC01128 Gene

  • GC01P000816
  • GC01P000826
  • GC01P001036
  • GC01P001063
  • GC01P001086
  • GC01P001285
  • GC01P000829
  • GC01P000864
  • GC01P000880
  • GC01P000906
  • GC01P000913
  • GC01P000951
  • GC01P000974
  • GC01P001015

Summaries for LINC01128 Gene

GeneCards Summary for LINC01128 Gene

LINC01128 (Long Intergenic Non-Protein Coding RNA 1128) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for LINC01128 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LINC01128 Gene

Genomics for LINC01128 Gene

GeneHancer (GH) Regulatory Elements Pubs

Download GeneHancer 2017 data
Promoters and enhancers for LINC01128 Gene
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LINC01128 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for LINC01128 Gene

Genomic Locations for LINC01128 Gene
chr1:825,138-859,572
(GRCh38/hg38)
Size:
34,435 bases
Orientation:
Plus strand
chr1:762,988-794,826
(GRCh37/hg19)
Size:
31,839 bases
Orientation:
Plus strand

Genomic View for LINC01128 Gene

Genes around LINC01128 on UCSC Golden Path with GeneCards custom track
LINC01128 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Cytogenetic band:
LINC01128 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC01128 Gene
GeneLoc Logo Genomic Neighborhood • Exon Structure • Gene Density

RefSeq DNA sequence for LINC01128 Gene

Proteins for LINC01128 Gene

Products:

  1. Antibody
  2. Protein
  3. Assay

Post-translational modifications for LINC01128 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC01128 Gene

Domains & Families for LINC01128 Gene

Gene Families for LINC01128 Gene

HGNC:
genes like me logo Genes that share domains with LINC01128: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LINC01128 Gene

Function for LINC01128 Gene

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  1. Animal Model
  2. CRISPR
  3. miRNA
  4. Inhibitory RNA
  5. Clone
  6. Cell Line

Phenotypes From GWAS Catalog for LINC01128 Gene

genes like me logo Genes that share phenotypes with LINC01128: view

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC01128 Gene

Localization for LINC01128 Gene

Subcellular locations from

COMPARTMENTS
Extracellular space Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi Apparatus Nucleus Mitochondrion 0 1 2 3 4 5 Confidence
COMPARTMENTS Subcellular localization image for LINC01128 gene
Compartment Confidence
plasma membrane 1

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC01128 Gene

Pathways & Interactions for LINC01128 Gene

PathCards logo

SuperPathways for LINC01128 Gene

No Data Available

Gene Ontology (GO) - Biological Process for LINC01128 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for LINC01128 Gene

Drugs & Compounds for LINC01128 Gene

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  1. Drug
No Compound Related Data Available

Transcripts for LINC01128 Gene

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  1. CRISPR
  2. miRNA
  3. Inhibitory RNA
  4. Clone

Non-coding RNA (ncRNA) Transcripts from RNAcentral for LINC01128 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS000075B941_9606 lncRNA 6776 5

HGNC: 49377,

RefSeq: NR_047519,

LncBook: HSALNT0000170,

LNCipedia: LINC01128:60,

NONCODE: NONHSAT000161.2,

URS000075C67B_9606 lncRNA 6623 4

RefSeq: NR_047521,

LncBook: HSALNT0000168,

LNCipedia: LINC01128:58,

NONCODE: NONHSAT000159.2,

URS000075E2AB_9606 lncRNA 6527 4

RefSeq: NR_047523,

LncBook: HSALNT0000173,

LNCipedia: LINC01128:63,

NONCODE: NONHSAT000164.2,

URS000075DA1A_9606 lncRNA 6490 4

RefSeq: NR_047525,

LncBook: HSALNT0000192,

LNCipedia: LINC01128:83,

NONCODE: NONHSAT000171.2,

URS000075EEE0_9606 lncRNA 6439 4

RefSeq: NR_047524,

LncBook: HSALNT0000169,

LNCipedia: LINC01128:59,

NONCODE: NONHSAT000160.2,

LINC01128 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for LINC01128 Gene

21 NCBI additional mRNA sequence :
1 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for LINC01128 Gene

No ASD Table

Relevant External Links for LINC01128 Gene

GeneLoc Exon Structure for
LINC01128

Expression for LINC01128 Gene

Products:

  1. Primer
  2. Gene Expression Assay

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for LINC01128 Gene

mRNA expression in normal human tissues for LINC01128 Gene
mRNA expression by GTEx for LINC01128 Gene

mRNA differential expression in normal tissues according to GTEx for LINC01128 Gene

This gene is overexpressed in Heart - Left Ventricle (x5.1).

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for LINC01128

genes like me logo Genes that share expression patterns with LINC01128: view

Primer Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC01128 Gene

Orthologs for LINC01128 Gene

Evolution for LINC01128 Gene

ENSEMBL:
Gene Tree for LINC01128 (if available)
TreeFam:
Gene Tree for LINC01128 (if available)

No data available for Orthologs for LINC01128 Gene

Paralogs for LINC01128 Gene

No data available for Paralogs for LINC01128 Gene

Variants for LINC01128 Gene

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  1. SNP Genotyping and Copy Number Assay

Additional dbSNP identifiers (rs#s) for LINC01128 Gene

Structural Variations from Database of Genomic Variants (DGV) for LINC01128 Gene

Variant ID Type Subtype PubMed ID
dgv1e55 CNV gain 17911159
dgv1n111 CNV duplication 26073780
dgv1n67 CNV gain 20364138
dgv2n111 CNV duplication 26073780
dgv3n111 CNV duplication 26073780
dgv5n100 CNV gain 25217958
esv1517733 CNV deletion 17803354
esv2661847 CNV deletion 23128226
esv2663916 CNV deletion 23128226
esv2713917 CNV deletion 23290073
esv2715028 CNV deletion 23290073
esv2716139 CNV deletion 23290073
esv2748251 CNV deletion 23290073
esv2749362 CNV deletion 23290073
esv2762129 CNV gain 21179565
esv2762248 CNV loss 21179565
esv33946 CNV gain 17666407
esv3539675 CNV deletion 23714750
esv3584976 CNV gain 21293372
esv3584980 CNV loss 21293372
esv3584981 CNV loss 21293372
esv3584982 CNV gain 21293372
esv3584983 CNV loss 21293372
esv3584984 CNV loss 21293372
esv3890635 CNV gain 25118596
nsv1003571 CNV loss 25217958
nsv1004962 CNV gain 25217958
nsv1005935 CNV gain 25217958
nsv1009537 CNV gain 25217958
nsv10161 CNV gain+loss 18304495
nsv1074928 CNV deletion 25765185
nsv1133788 CNV deletion 24896259
nsv1159749 CNV duplication 26073780
nsv1159750 CNV duplication 26073780
nsv298 CNV insertion 18451855
nsv442837 CNV gain+loss 18776908
nsv482937 CNV loss 15286789
nsv508924 CNV insertion 20534489
nsv517709 CNV gain+loss 19592680
nsv832980 CNV gain 17160897
nsv945734 CNV duplication 23825009
nsv999785 CNV gain 25217958

Additional Variant Information for LINC01128 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC01128

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP and Variation tolerance for LINC01128 Gene

Disorders for LINC01128 Gene

Additional Disease Information for LINC01128

ATLAS of Genetics and Cytogenetics in Oncology and Haematology
Open Targets Platform

No disorders were found for LINC01128 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LINC01128 Gene

Publications for LINC01128 Gene

  1. LINC01128 expedites cervical cancer progression by regulating miR-383-5p/SFN axis. (PMID: 31779593) Hu Y … Fang X (BMC cancer 2019) 3
  2. VIRMA mediates preferential m6A mRNA methylation in 3'UTR and near stop codon and associates with alternative polyadenylation. (PMID: 29507755) Yue Y … Liu J (Cell discovery 2018) 3
  3. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K … Sugano S (Genome research 2006) 3
  4. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3
  5. Transcriptome characterization elucidates signaling networks that control human ES cell growth and differentiation. (PMID: 15146197) Brandenberger R … Stanton LW (Nature biotechnology 2004) 3

ExternalLinks

View latest publications for LINC01128 gene in Mastermind

Products for LINC01128 Gene

Sources for LINC01128 Gene