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Aliases for LINC01127 Gene
Subcategory (RNA class) for LINC01127 Gene
lncRNA
Aliases for LINC01127 Gene
External Ids for LINC01127 Gene
- HGNC: 49292
- NCBI Entrez Gene: 100506328
- Ensembl: ENSG00000281162
Previous GeneCards Identifiers for LINC01127 Gene
- GC02P102602
Summaries for LINC01127 Gene
GeneCards Summary for LINC01127 Gene
LINC01127 (Long Intergenic Non-Protein Coding RNA 1127) is an RNA Gene, and is affiliated with the lncRNA class.
Additional gene information for LINC01127 Gene
- HGNC (49292)
- NCBI Entrez Gene (100506328)
- Ensembl (ENSG00000281162)
- Open Targets Platform(ENSG00000281162)
- Search for LINC01127 at DataMed
- Search for LINC01127 at HumanCyc
No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LINC01127 Gene
Genomics for LINC01127 Gene
GeneHancer (GH) Regulatory Elements Pubs
Promoters and enhancers for LINC01127 Gene
| GeneHancer (GH) Identifier | GH Type | GH Score |
GH Sources | Gene Association Score | Total Score | TSS distance (kb) | Number of Genes Away | Size (kb) | Transcription Factor Binding Sites |
Gene Targets |
|---|---|---|---|---|---|---|---|---|---|---|
| GH02J101960 | Promoter/Enhancer | 1.7 | EPDnew Ensembl ENCODE dbSUPER | 250.7 | -0.5 | -548 | 3 | CEBPA KDM6A THAP11 FOXA2 SMAD4 SAP130 RXRA RARA TEAD3 DMAP1 | LINC01127 IL1R2 MFSD9 HSALNG0017391 MAP4K4 | |
| GH02J101983 | Promoter | 0.6 | EPDnew | 250.3 | +21.7 | 21693 | 0.1 | CUX1 FOS EP300 | IL1R2 LINC01127 MAP4K4 | |
| GH02J101957 | Enhancer | 0.4 | ENCODE dbSUPER | 0.7 | -3.8 | -3801 | 1.8 | IKZF1 | IL1R2 LINC01127 HSALNG0017391 MAP4K4 | |
| GH02J101971 | Enhancer | 0.7 | ENCODE dbSUPER | 0.4 | +10.8 | 10775 | 2.5 | MYC MAX PKNOX1 BHLHE40 EGR2 RAD21 CEBPB | IL1R1-AS1 IL1R2 MFSD9 LINC01127 MAP4K4 | |
| GH02J101976 | Enhancer | 0.6 | Ensembl dbSUPER | 0.4 | +14.7 | 14749 | 0.4 | EBF1 IKZF1 ZNF217 ZNF687 MTA2 | IL1R1-AS1 LINC01127 IL1R2 MAP4K4 |
- Elite GeneHancer and/or Elite GeneHancer-gene association
Download GeneHancer data from 2017 publication |
Request up-to-date GeneHancer data (full dataset)
GeneHancers around LINC01127 on the GeneHancer Hub at the UCSC Golden Path
Genomic Locations for LINC01127 Gene
Latest Assembly
- chr2:101,962,052-101,989,011
- (GRCh38/hg38)
- Size:
- 26,960 bases
- Orientation:
- Plus strand
Previous Assembly
- chr2:102,599,927-102,602,007
- (GRCh37/hg19 by Entrez Gene)
- Size:
- 2,081 bases
- Orientation:
- Plus strand
Genomic View for LINC01127 Gene
Genes around LINC01127 on UCSC Golden Path with GeneCards custom track
LINC01127 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path
- Cytogenetic band:
-
- 2q11.2 by HGNC
- 2q11.2 by Entrez Gene
- 2q11.2 by Ensembl
LINC01127 Gene in genomic location: bands according to
Ensembl, locations according to GeneLoc
(and/or Entrez Gene and/or Ensembl if different)
Genomic Neighborhood
• Exon Structure
• Gene Density
RefSeq DNA sequence for LINC01127 Gene
Proteins for LINC01127 Gene
Post-translational modifications for LINC01127 Gene
No Post-translational modifications
No data available for DME Specific Peptides for LINC01127 Gene
Domains & Families for LINC01127 Gene
Gene Families for LINC01127 Gene
No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LINC01127 Gene
Function for LINC01127 Gene
Phenotypes From GWAS Catalog for LINC01127 Gene
CRISPR products for research
Inhibitory RNAs for research
Clone products for research
Cell Lines for research
No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC01127 Gene
Localization for LINC01127 Gene
No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC01127 Gene
Transcripts for LINC01127 Gene
Non-coding RNA (ncRNA) Transcripts from RNAcentral for LINC01127 Gene
| RNAcentral Transcript ID | Subcategory | Length (nts) | # of Sources | Source Identifiers and Annotations |
|---|---|---|---|---|
| URS0000811F88_9606 | lncRNA | 3730 | 4 |
Ensembl: ENST00000627215 (view in UCSC) , LncBook: HSALNT0036612, LNCipedia: LINC01127:21, NONCODE: NONHSAT072836.2, |
| URS000075DF7A_9606 | lncRNA | 1000 | 4 |
RefSeq: NR_103791, LncBook: HSALNT0036624, LNCipedia: LINC01127:27, NONCODE: NONHSAT072838.2, |
| URS0000811B28_9606 | lncRNA | 766 | 4 |
Ensembl: ENST00000625702 (view in UCSC) , LncBook: HSALNT0036625, LNCipedia: LINC01127:28, NONCODE: NONHSAT182274.1, |
| URS0000811853_9606 | lncRNA | 592 | 4 |
Ensembl: ENST00000627337 (view in UCSC) , LncBook: HSALNT0036631, LNCipedia: LINC01127:34, NONCODE: NONHSAT182275.1, |
| URS0000811A3B_9606 | lncRNA | 577 | 4 |
Ensembl: ENST00000627273 (view in UCSC) , LncBook: HSALNT0036633, LNCipedia: LINC01127:37, NONCODE: NONHSAT182276.1, |
LINC01127 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path
Additional transcripts not in RNAcentral for LINC01127 Gene
- 5 NCBI additional mRNA sequence :
CRISPR products for research
Inhibitory RNAs for research
Clone products for research
Relevant External Links for LINC01127 Gene
- GeneLoc Exon Structure for
- LINC01127
Expression for LINC01127 Gene
Transcriptomic regulation report from SPP (The Signaling Pathways Project) for LINC01127
No Expression Related Data Available
Gene Expression Assays for research
No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC01127 Gene
Orthologs for LINC01127 Gene
No data available for Orthologs for LINC01127 Gene
Paralogs for LINC01127 Gene
No data available for Paralogs for LINC01127 Gene
Variants for LINC01127 Gene
All consequence types are included: molecular consequences (e.g. missense, synonymous), and location-based (e.g. intron, upstream).
Additional Variant Information for LINC01127 Gene
- SNPedia medical, phenotypic, and genealogical associations of SNPs for
- LINC01127
SNP Genotyping and Copy Number Assays for research
No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for LINC01127 Gene
Disorders for LINC01127 Gene
Additional Disease Information for LINC01127
- Atlas
- ATLAS of Genetics and Cytogenetics in Oncology and Haematology
- Open Targets Platform
- Open Targets Platform
No disorders were found for LINC01127 Gene.
No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LINC01127 Gene
Publications for LINC01127 Gene
- Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K … Sugano S (Genome research 2006) 3
- Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3
Products for LINC01127 Gene
- Browse OriGene Antibodies
- Custom Antibody Services
- Browse OriGene ELISA Kits
- Custom Assay Services
- Search Origene for Purified Proteins, MassSpec and Protein Over-expression Lysates for LINC01127
- Origene Custom Protein Services for LINC01127
- Browse OriGene Inhibitory RNA Products For LINC01127
- Browse OriGene qPCR primer pairs and template standards
- Browse CRISPR knockouts for LINC01127
- Custom cloning services - gene synthesis, subcloning, mutagenesis, variant library, vector shuttling
- Browse OriGene miRNA Products For LINC01127
- Browse Sino Biological cDNA Clones
- Browse Sino Biological Recombinant Proteins
- Browse Sino Biological Cell Lysates
- Browse Sino Biological Antibodies
- Browse Sino Biological Assays
- Browse ELISA Kits
- Browse CRO Services
- High-throughput Antibody Production Service
- Protein Production Service
- Epitope Tag Antibodies & Reporter Protein Antibodies
- Lentiviral ORF Clones
- Browse GeneCopoeia Cell Lines
- Search GeneCopoeia for knockout CRISPR/Cas9 clones, lentivirus, and/or AAV products for LINC01127
- Search GeneCopoeia for ORF cDNA, lentivirus, AAV viral particles, and/or promoter clone products for LINC01127
- Search GeneCopoeia for miRNA 3'UTR Target clone products for LINC01127
- Search GeneCopoeia for shRNA, lentivirus, and/or AAV clone products for LINC01127
Sources for LINC01127 Gene
- (1) GeneCards
- (2) HGNC
- (3) NCBI Entrez Gene
- (4) UniProtKB/Swiss-Prot
- (5) Ensembl
- (6) OMIM® (Updated: 05-Mar-2021)
- (7) GeneLoc
- (8) Gene Wiki
- (9) UCSC
- (10) PhosphoSitePlus
- (11) Cell Signaling Technology
- (12) GO
- (13) UniProtKB/TrEMBL
- (14) InterPro
- (15) ProtoNet
- (16) Blocks
- (17) MGI
- (18) IUBMB
- (19) KEGG
- (20) MINT
- (21) STRING
- (22) IntAct
- (23) Novoseek
- (24) PharmGKB
- (25) DrugBank
- (26) HMDB
- (27) ASD
- (28) SAGE
- (29) SOURCE
- (30) HomoloGene
- (31) PanEnsembl
- (32) euGenes
- (33) SGD
- (34) FlyBase
- (35) WormBase
- (36) Pseudogene
- (37) DGV
- (38) dbSNP
- (39) GenAtlas
- (40) HGMD
- (41) GAD
- (42) BGMUT
- (43) HuGE
- (44) Atlas
- (45) GenBank
- (46) HORDE
- (47) HUGE
- (48) IMGT
- (49) Leiden
- (50) miRBase
- (51) DME
- (52) OriGene
- (53) PubMed
- (54) R&D Systems
- (55) TGDB
- (56) Tocris
- (57) Abcam
- (58) Novus Biologicals
- (59) ProSpec
- (60) Sino Biological
- (61) GenScript
- (62) Qiagen
- (63) OCA
- (64) Proteopedia
- (65) MOPED
- (66) neXtProt
- (67) Reactome
- (68) GeneGo (Thomson Reuters)
- (69) DISEASES
- (70) SIMAP
- (71) GenomeRNAi
- (72) LifeMap
- (73) miRTarBase
- (74) MalaCards
- (75) Invitrogen
- (76) BitterDB
- (77) ESI-BIO
- (78) RefSeq
- (79) BioSystems
- (80) MaxQB
- (81) IUPHAR
- (82) BioGPS
- (83) Illumina
- (84) COMPARTMENTS
- (85) HOMER
- (86) PaxDb
- (87) ApexBio
- (88) Addgene
- (89) antibodies-online
- (90) CYP
- (91) NONCODE
- (92) TreeFam
- (93) PathCards
- (94) GeneReviews
- (95) GeneTex
- (96) Taconic Biosciences
- (97) GTEx
- (98) ProteomicsDB
- (99) SCBT
- (100) DGIdb
- (101) ClinicalTrials
- (102) RVIS
- (103) SIGNOR
- (104) diseasecard
- (105) NIH Rare Diseases
- (106) Orphanet
- (107) UMLS
- (108) GTR
- (109) Disease Ontology
- (110) MedlinePlus Genetics
- (111) MeSH
- (112) MedlinePlus
- (113) CDC
- (114) NINDS
- (115) NCBI Bookshelf
- (116) ClinVar
- (117) Gene Damage Index
- (118) HPO
- (119) UDN
- (120) VISTA
- (121) FANTOM5
- (122) ENCODE
- (123) ProSci
- (124) Horizon
- (125) The Signaling Pathways Project (SPP)
- (126) IID
- (127) VectorBuilder
- (128) SNPedia
- (129) BRCA Exchange
- (130) CIViC
- (131) ProteoGenix
- (132) dbSUPER
- (133) TISSUES
- (134) Gene ORGANizer
- (135) abm
- (136) Human Protein Atlas
- (137) GWAS Catalog
- (138) Monarch Initiative
- (139) DataMed
- (140) HumanCyc
- (141) UCNEbase
- (142) EPDnew
- (143) Applied Biosystems
- (144) GlyConnect
- (145) Aminode
- (146) GeneCopoeia
- (147) GPS-Prot
- (148) RNAcentral
- (149) LncRNADisease
- (150) LOVD
- (151) miR2Disease
- (152) DiseaseEnhancer
- (153) Boster Bio
- (154) Biorbyt
- (155) Biocompare
- (156) Mastermind
- (157) CTD^2 Dashboard
- (158) CraniofacialAtlas
- (159) GeneImprint
- (160) Synthego
- (161) ENA
- (162) GtRNAdb
- (163) LncBase
- (164) LncBook
- (165) LNCipedia
- (166) Modomics
- (167) PDBe
- (168) Rfam
- (169) SILVA
- (170) snOPY
- (171) SRPDB
- (172) GENCODE
- (173) TarBase
- (174) Open Targets Platform
- (175) 5SRRNADB
- (176) snoDB
- (177) MirGeneDB