Aliases for LINC01127 Gene

Data sources for LINC01127 Gene:

Subcategory (RNA class) for LINC01127 Gene

lncRNA

Aliases for LINC01127 Gene

External Ids for LINC01127 Gene

Previous GeneCards Identifiers for LINC01127 Gene

  • GC02P102602

Summaries for LINC01127 Gene

GeneCards Summary for LINC01127 Gene

LINC01127 (Long Intergenic Non-Protein Coding RNA 1127) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for LINC01127 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LINC01127 Gene

Genomics for LINC01127 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for LINC01127 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH02J101960 Promoter/Enhancer 1.7 EPDnew Ensembl ENCODE dbSUPER 250.7 -0.5 -548 3 CEBPA KDM6A THAP11 FOXA2 SMAD4 SAP130 RXRA RARA TEAD3 DMAP1 LINC01127 IL1R2 MFSD9 HSALNG0017391 MAP4K4
GH02J101983 Promoter 0.6 EPDnew 250.3 +21.7 21693 0.1 CUX1 FOS EP300 IL1R2 LINC01127 MAP4K4
GH02J101957 Enhancer 0.4 ENCODE dbSUPER 0.7 -3.8 -3801 1.8 IKZF1 IL1R2 LINC01127 HSALNG0017391 MAP4K4
GH02J101971 Enhancer 0.7 ENCODE dbSUPER 0.4 +10.8 10775 2.5 MYC MAX PKNOX1 BHLHE40 EGR2 RAD21 CEBPB IL1R1-AS1 IL1R2 MFSD9 LINC01127 MAP4K4
GH02J101976 Enhancer 0.6 Ensembl dbSUPER 0.4 +14.7 14749 0.4 EBF1 IKZF1 ZNF217 ZNF687 MTA2 IL1R1-AS1 LINC01127 IL1R2 MAP4K4
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LINC01127 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for LINC01127 Gene

Latest Assembly
chr2:101,962,052-101,989,011
(GRCh38/hg38)
Size:
26,960 bases
Orientation:
Plus strand

Previous Assembly
chr2:102,599,927-102,602,007
(GRCh37/hg19 by Entrez Gene)
Size:
2,081 bases
Orientation:
Plus strand

Genomic View for LINC01127 Gene

Genes around LINC01127 on UCSC Golden Path with GeneCards custom track
LINC01127 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Cytogenetic band:
LINC01127 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC01127 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINC01127 Gene

Proteins for LINC01127 Gene

Post-translational modifications for LINC01127 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC01127 Gene

Domains & Families for LINC01127 Gene

Gene Families for LINC01127 Gene

genes like me logo Genes that share domains with LINC01127: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LINC01127 Gene

Function for LINC01127 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC01127 Gene

Localization for LINC01127 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC01127 Gene

Pathways & Interactions for LINC01127 Gene

PathCards logo

SuperPathways for LINC01127 Gene

No Data Available

Gene Ontology (GO) - Biological Process for LINC01127 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for LINC01127 Gene

Drugs & Compounds for LINC01127 Gene

No Compound Related Data Available

Transcripts for LINC01127 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for LINC01127 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS0000811F88_9606 lncRNA 3730 4

Ensembl: ENST00000627215 (view in UCSC) ,

LncBook: HSALNT0036612,

LNCipedia: LINC01127:21,

NONCODE: NONHSAT072836.2,

URS000075DF7A_9606 lncRNA 1000 4

RefSeq: NR_103791,

LncBook: HSALNT0036624,

LNCipedia: LINC01127:27,

NONCODE: NONHSAT072838.2,

URS0000811B28_9606 lncRNA 766 4

Ensembl: ENST00000625702 (view in UCSC) ,

LncBook: HSALNT0036625,

LNCipedia: LINC01127:28,

NONCODE: NONHSAT182274.1,

URS0000811853_9606 lncRNA 592 4

Ensembl: ENST00000627337 (view in UCSC) ,

LncBook: HSALNT0036631,

LNCipedia: LINC01127:34,

NONCODE: NONHSAT182275.1,

URS0000811A3B_9606 lncRNA 577 4

Ensembl: ENST00000627273 (view in UCSC) ,

LncBook: HSALNT0036633,

LNCipedia: LINC01127:37,

NONCODE: NONHSAT182276.1,

LINC01127 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for LINC01127 Gene

5 NCBI additional mRNA sequence :

Alternative Splicing Database (ASD) splice patterns (SP) for LINC01127 Gene

No ASD Table

Relevant External Links for LINC01127 Gene

GeneLoc Exon Structure for
LINC01127

Expression for LINC01127 Gene

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for LINC01127

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC01127 Gene

Orthologs for LINC01127 Gene

Evolution for LINC01127 Gene

ENSEMBL:
Gene Tree for LINC01127 (if available)
TreeFam:
Gene Tree for LINC01127 (if available)

No data available for Orthologs for LINC01127 Gene

Paralogs for LINC01127 Gene

No data available for Paralogs for LINC01127 Gene

Variants for LINC01127 Gene

dbSNP identifiers (rs#s) for variants without ClinVar clinical significance for LINC01127 Gene

All consequence types are included: molecular consequences (e.g. missense, synonymous), and location-based (e.g. intron, upstream).

Additional Variant Information for LINC01127 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC01127

SNP Genotyping and Copy Number Assays for research

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for LINC01127 Gene

Disorders for LINC01127 Gene

Additional Disease Information for LINC01127

No disorders were found for LINC01127 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LINC01127 Gene

Publications for LINC01127 Gene

  1. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K … Sugano S (Genome research 2006) 3
  2. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3

Products for LINC01127 Gene

Sources for LINC01127 Gene