Aliases for LINC01123 Gene

Subcategory (RNA class) for LINC01123 Gene

lncRNA

Number of RNA Genes sources:

3 / 17

Aliases for LINC01123 Gene

  • Long Intergenic Non-Protein Coding RNA 1123 2 3 5
  • LINC01123 2 5 165
  • NONHSAG028908.2 91
  • HSALNG0017805 164
  • LINC01106 2

External Ids for LINC01123 Gene

Previous GeneCards Identifiers for LINC01123 Gene

  • GC02P110749

Summaries for LINC01123 Gene

GeneCards Summary for LINC01123 Gene

LINC01123 (Long Intergenic Non-Protein Coding RNA 1123) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for LINC01123 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LINC01123 Gene

Genomics for LINC01123 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for LINC01123 Gene
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LINC01123 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for LINC01123 Gene

Genomic Locations for LINC01123 Gene
chr2:109,986,583-109,996,414
(GRCh38/hg38)
Size:
9,832 bases
Orientation:
Plus strand
chr2:110,744,640-110,753,717
(GRCh37/hg19)
Size:
9,078 bases
Orientation:
Plus strand

Genomic View for LINC01123 Gene

Genes around LINC01123 on UCSC Golden Path with GeneCards custom track
LINC01123 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Cytogenetic band:
LINC01123 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC01123 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINC01123 Gene

Proteins for LINC01123 Gene

Post-translational modifications for LINC01123 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC01123 Gene

Domains & Families for LINC01123 Gene

Gene Families for LINC01123 Gene

genes like me logo Genes that share domains with LINC01123: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LINC01123 Gene

Function for LINC01123 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC01123 Gene

Localization for LINC01123 Gene

Subcellular locations from

COMPARTMENTS
Extracellular space Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi Apparatus Nucleus Mitochondrion 0 1 2 3 4 5 Confidence
COMPARTMENTS Subcellular localization image for LINC01123 gene
Compartment Confidence
extracellular 1

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC01123 Gene

Pathways & Interactions for LINC01123 Gene

PathCards logo

SuperPathways for LINC01123 Gene

No Data Available

Gene Ontology (GO) - Biological Process for LINC01123 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for LINC01123 Gene

Drugs & Compounds for LINC01123 Gene

No Compound Related Data Available

Transcripts for LINC01123 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for LINC01123 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS000075DA1D_9606 lncRNA 2519 4

HGNC: 49269,

RefSeq: NR_046110,

LNCipedia: LINC01123:4,

NONCODE: NONHSAT073164.2,

URS000075E510_9606 lncRNA 2334 4

RefSeq: NR_046111,

LncBook: HSALNT0037590,

LNCipedia: LINC01123:2,

NONCODE: NONHSAT073162.2,

URS000075D3B0_9606 lncRNA 1092 3

RefSeq: NR_046112,

LNCipedia: LINC01123:3,

NONCODE: NONHSAT073163.2,

URS00004B7F86_9606 lncRNA 2436 2

Ensembl: ENST00000419296 (view in UCSC) ,

LNCipedia: LINC01123:5,

URS000053B613_9606 lncRNA 2271 2

Ensembl: ENST00000336905 (view in UCSC) ,

LNCipedia: LINC01123:8,

LINC01123 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for LINC01123 Gene

4 NCBI additional mRNA sequence :

Alternative Splicing Database (ASD) splice patterns (SP) for LINC01123 Gene

No ASD Table

Relevant External Links for LINC01123 Gene

GeneLoc Exon Structure for
LINC01123

Expression for LINC01123 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for LINC01123 Gene

mRNA differential expression in normal tissues according to GTEx for LINC01123 Gene

This gene is overexpressed in Brain - Frontal Cortex (BA9) (x5.2), Brain - Cortex (x4.9), and Brain - Anterior cingulate cortex (BA24) (x4.3).

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for LINC01123

genes like me logo Genes that share expression patterns with LINC01123: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC01123 Gene

Orthologs for LINC01123 Gene

Evolution for LINC01123 Gene

ENSEMBL:
Gene Tree for LINC01123 (if available)
TreeFam:
Gene Tree for LINC01123 (if available)

No data available for Orthologs for LINC01123 Gene

Paralogs for LINC01123 Gene

No data available for Paralogs for LINC01123 Gene

Variants for LINC01123 Gene

Additional dbSNP identifiers (rs#s) for LINC01123 Gene

Structural Variations from Database of Genomic Variants (DGV) for LINC01123 Gene

Variant ID Type Subtype PubMed ID
dgv1162e212 CNV gain 25503493
dgv1163e212 CNV loss 25503493
dgv2208e59 CNV duplication 20981092
dgv2209e59 CNV duplication 20981092
dgv4037n100 CNV gain 25217958
dgv4038n100 CNV loss 25217958
dgv4047n100 CNV loss 25217958
dgv50n82 CNV duplication 23825009
esv24603 CNV gain 19812545
esv2751812 CNV loss 17911159
esv27594 CNV gain 19812545
esv3575292 CNV gain 25503493
esv3584010 CNV loss 25503493
nsv1003103 CNV gain+loss 25217958
nsv1010477 CNV gain+loss 25217958
nsv10115 CNV gain 18304495
nsv10122 CNV gain 18304495
nsv1115573 CNV duplication 24896259
nsv1147364 CNV duplication 26484159
nsv1149522 OTHER inversion 26484159
nsv469649 CNV loss 16826518
nsv499578 OTHER inversion 21111241
nsv510884 OTHER complex 20534489
nsv582654 CNV loss 21841781
nsv7324 OTHER inversion 18451855
nsv834329 CNV gain 17160897
nsv953791 CNV deletion 24416366
nsv961481 CNV duplication 23825009
nsv961635 CNV duplication 23825009
nsv961862 CNV duplication 23825009

Additional Variant Information for LINC01123 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC01123

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP and Variation tolerance for LINC01123 Gene

Disorders for LINC01123 Gene

No disorders were found for LINC01123 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LINC01123 Gene

Publications for LINC01123 Gene

  1. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K … Sugano S (Genome research 2006) 3
  2. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3
  3. Sequence comparison of human and mouse genes reveals a homologous block structure in the promoter regions. (PMID: 15342556) Suzuki Y … Sugano S (Genome research 2004) 3
  4. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3

Products for LINC01123 Gene

Sources for LINC01123 Gene