Aliases for LINC01121 Gene

Subcategory (RNA class) for LINC01121 Gene

lncRNA

Number of RNA Genes sources:

3 / 14

Aliases for LINC01121 Gene

  • Long Intergenic Non-Protein Coding RNA 1121 2 3 5
  • LINC01121 2 168
  • HSALNG0014633 167
  • NONHSAG027639 92
  • NGNL6975 3
  • UNQ6975 3

External Ids for LINC01121 Gene

Previous GeneCards Identifiers for LINC01121 Gene

  • GC02M045397

Summaries for LINC01121 Gene

GeneCards Summary for LINC01121 Gene

LINC01121 (Long Intergenic Non-Protein Coding RNA 1121) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for LINC01121 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LINC01121 Gene

Genomics for LINC01121 Gene

GeneHancer (GH) Regulatory Elements for LINC01121 Gene

Promoters and enhancers for LINC01121 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH02J045273 Enhancer 1.5 Ensembl ENCODE CraniofacialAtlas dbSUPER 0.3 +47.2 47244 6.2 EP300 FOXK2 POLR2G NCOR1 JUND REST KDM6A TCF7 FOXA1 CUX1 hsa-miR-1273e-039 LINC01121 LOC105374576
GH02J045315 Enhancer 0.7 Ensembl ENCODE 0.4 +6.8 6835 2.4 JUND ZNF316 MAFK GATA3 FOS ATF4 POLR2A ATF2 ATF7 NONHSAG027642.2 LINC01121
GH02J045255 Enhancer 1.4 Ensembl ENCODE CraniofacialAtlas dbSUPER 0.2 +63.4 63397 10 FOXK2 EP300 POLR2G USF1 CUX1 ZBTB25 TGIF2 SKI TEAD1 ZKSCAN8 SRBD1 hsa-miR-1273e-039 LOC105374576 LINC01121
GH02J045300 Enhancer 0.7 Ensembl 0.4 +23.2 23196 0.4 TCF7 TEAD1 ZSCAN9 FOXA2 KMT2B TFDP1 SAP130 ZFHX2 SMAD4 BCL6 SIX2 hsa-miR-1273e-039 lnc-SRBD1-3 LINC01121
GH02J045283 Enhancer 0.8 Ensembl ENCODE 0.3 +39.6 39649 2.1 JUND FOS FOSL2 ZNF335 HIC1 GLIS1 ZNF398 SMARCE1 ZNF660 NFE2L2 SIX2 hsa-miR-1273e-039 LINC01121 LOC105374576
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LINC01121 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LINC01121 Gene

Genomic Locations for LINC01121 Gene
chr2:45,162,702-45,323,397
(GRCh38/hg38)
Size:
160,696 bases
Orientation:
Minus strand
chr2:45,392,009-45,550,434
(GRCh37/hg19)
Size:
158,426 bases
Orientation:
Minus strand

Genomic View for LINC01121 Gene

Genes around LINC01121 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LINC01121 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC01121 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINC01121 Gene

Proteins for LINC01121 Gene

Post-translational modifications for LINC01121 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC01121 Gene

Domains & Families for LINC01121 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LINC01121 Gene

Function for LINC01121 Gene

Phenotypes From GWAS Catalog for LINC01121 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC01121 Gene

Localization for LINC01121 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC01121 Gene

Pathways & Interactions for LINC01121 Gene

PathCards logo

SuperPathways for LINC01121 Gene

No Data Available
;

Gene Ontology (GO) - Biological Process for LINC01121 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for LINC01121 Gene

Drugs & Compounds for LINC01121 Gene

No Compound Related Data Available

Transcripts for LINC01121 Gene

mRNA/cDNA for LINC01121 Gene

17 RNACentral transcripts :
1 REFSEQ mRNAs :
3 NCBI additional mRNA sequence :
6 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
8 NONCODE transcripts :
8 LncBook transcripts :
12 LNCipedia transcripts :

Alternative Splicing Database (ASD) splice patterns (SP) for LINC01121 Gene

No ASD Table

Relevant External Links for LINC01121 Gene

GeneLoc Exon Structure for
LINC01121

Expression for LINC01121 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for LINC01121 Gene

mRNA differential expression in normal tissues according to GTEx for LINC01121 Gene

This gene is overexpressed in Testis (x10.3) and Vagina (x5.4).

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for LINC01121

genes like me logo Genes that share expression patterns with LINC01121: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC01121 Gene

Orthologs for LINC01121 Gene

Evolution for LINC01121 Gene

ENSEMBL:
Gene Tree for LINC01121 (if available)
TreeFam:
Gene Tree for LINC01121 (if available)

No data available for Orthologs for LINC01121 Gene

Paralogs for LINC01121 Gene

No data available for Paralogs for LINC01121 Gene

Variants for LINC01121 Gene

Additional dbSNP identifiers (rs#s) for LINC01121 Gene

Structural Variations from Database of Genomic Variants (DGV) for LINC01121 Gene

Variant ID Type Subtype PubMed ID
dgv1119e212 CNV gain 25503493
dgv3804n100 CNV gain 25217958
dgv456n27 CNV loss 19166990
dgv6841n54 CNV loss 21841781
esv2424728 CNV deletion 19546169
esv2751894 CNV gain 17911159
esv29116 CNV loss 19812545
esv3583775 CNV loss 25503493
nsv1078922 CNV insertion 25765185
nsv2712 CNV insertion 18451855
nsv526205 CNV loss 19592680
nsv581709 CNV gain 21841781
nsv998646 CNV loss 25217958

Additional Variant Information for LINC01121 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC01121

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP and Variation tolerance for LINC01121 Gene

Disorders for LINC01121 Gene

Additional Disease Information for LINC01121

No disorders were found for LINC01121 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LINC01121 Gene

Publications for LINC01121 Gene

  1. LINC01121 Inhibits Cell Apoptosis While Facilitating Proliferation, Migration, and Invasion Though Negative Regulation of the Camp/PKA Signaling Pathway via GLP1R. (PMID: 29843149) Qian YG … Wang WL (Cellular physiology and biochemistry : international journal of experimental cellular physiology, biochemistry, and pharmacology 2018) 2 3 54
  2. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3 54
  3. The secreted protein discovery initiative (SPDI), a large-scale effort to identify novel human secreted and transmembrane proteins: a bioinformatics assessment. (PMID: 12975309) Clark HF … Gray A (Genome research 2003) 3 54

Products for LINC01121 Gene

Sources for LINC01121 Gene