Aliases for LINC01120 Gene

Data sources for LINC01120 Gene:

RNA type for LINC01120 Gene

lncRNA

Aliases for LINC01120 Gene

External Ids for LINC01120 Gene

Previous GeneCards Identifiers for LINC01120 Gene

  • GC02P132260
  • GC02P131402
  • GC02P131833
  • GC02P132464
  • GC02P132751
  • GC02P133054

Summaries for LINC01120 Gene

GeneCards Summary for LINC01120 Gene

LINC01120 (Long Intergenic Non-Protein Coding RNA 1120) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for LINC01120 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LINC01120 Gene

Genomics for LINC01120 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for LINC01120 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH02J131402 Promoter 0.6 EPDnew 250.7 +3.9 3899 0.1 FOXM1 L3MBTL2 PKNOX1 USF1 ENSG00000276460 HSALNG0018889 LINC01120 piR-33184 piR-45763 piR-60231 RAB6D TUBA3D
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LINC01120 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for LINC01120 Gene

Latest Assembly
chr2:131,398,976-131,410,107
(GRCh38/hg38)
Size:
11,132 bases
Orientation:
Plus strand

Previous Assembly
chr2:132,160,474-132,165,801
(GRCh37/hg19 by Entrez Gene)
Size:
5,328 bases
Orientation:
Plus strand

chr2:132,160,474-132,166,622
(GRCh37/hg19 by Ensembl)
Size:
6,149 bases
Orientation:
Plus strand

Genomic View for LINC01120 Gene

Genes around LINC01120 on UCSC Golden Path with GeneCards custom track
LINC01120 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Cytogenetic band:
LINC01120 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC01120 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINC01120 Gene

Proteins for LINC01120 Gene

Post-translational modifications for LINC01120 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC01120 Gene

Domains & Families for LINC01120 Gene

Gene Families for LINC01120 Gene

genes like me logo Genes that share domains with LINC01120: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LINC01120 Gene

Function for LINC01120 Gene

Phenotypes for LINC01120 Gene

genes like me logo Genes that share phenotypes with LINC01120: view

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC01120 Gene

Localization for LINC01120 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC01120 Gene

Pathways & Interactions for LINC01120 Gene

PathCards logo

SuperPathways for LINC01120 Gene

No Data Available

Gene Ontology (GO) - Biological Process for LINC01120 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for LINC01120 Gene

Drugs & Compounds for LINC01120 Gene

No Compound Related Data Available

Transcripts for LINC01120 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for LINC01120 Gene

RNAcentral Transcript ID RNA Type Length (nts) # of Sources Source Identifiers and Annotations
URS000075DCEE_9606 lncRNA 3055 1

RefSeq: NR_036499,

URS0000EF2C5C_9606 lncRNA 2828 1

Ensembl: ENST00000671078 (view in UCSC) ,

URS0000EF4D88_9606 lncRNA 1992 1

Ensembl: ENST00000437751 (view in UCSC) ,

URS0000EEAFBD_9606 lncRNA 1675 1

Ensembl: ENST00000663072 (view in UCSC) ,

URS0000EF65CC_9606 lncRNA 1499 1

Ensembl: ENST00000668661 (view in UCSC) ,

LINC01120 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for LINC01120 Gene

6 NCBI additional mRNA sequence :

Alternative Splicing Database (ASD) splice patterns (SP) for LINC01120 Gene

No ASD Table

Relevant External Links for LINC01120 Gene

GeneLoc Exon Structure for
LINC01120

Expression for LINC01120 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for LINC01120 Gene

mRNA differential expression in normal tissues according to GTEx for LINC01120 Gene

This gene is overexpressed in Testis (x52.3).

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for LINC01120

genes like me logo Genes that share expression patterns with LINC01120: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC01120 Gene

Orthologs for LINC01120 Gene

Evolution for LINC01120 Gene

ENSEMBL:
Gene Tree for LINC01120 (if available)
TreeFam:
Gene Tree for LINC01120 (if available)
Alliance of Genome Resources:
Additional Orthologs for LINC01120

No data available for Orthologs for LINC01120 Gene

Paralogs for LINC01120 Gene

No data available for Paralogs for LINC01120 Gene

Variants for LINC01120 Gene

dbSNP identifiers (rs#s) for variants without ClinVar clinical significance for LINC01120 Gene

All consequence types are included: molecular consequences (e.g. missense, synonymous), and location-based (e.g. intron, upstream).

Structural Variations from Database of Genomic Variants (DGV) for LINC01120 Gene

Variant ID Type Subtype PubMed ID
dgv4075n100 CNV gain 25217958
dgv4077n100 CNV gain 25217958
dgv4078n100 CNV gain 25217958
dgv4079n100 CNV loss 25217958
dgv4080n100 CNV gain 25217958
dgv476n27 CNV loss 19166990
dgv7084n54 CNV loss 21841781
esv2670824 CNV deletion 23128226
esv2759092 CNV gain+loss 17122850
esv2760576 CNV gain+loss 21179565
esv34412 CNV gain 17911159
esv34704 CNV gain 17911159
esv3575300 CNV gain 25503493
esv3584079 CNV loss 25503493
esv3592477 CNV loss 21293372
esv3592478 CNV gain 21293372
esv3592480 CNV loss 21293372
esv3592481 CNV gain 21293372
esv3893359 CNV gain+loss 25118596
nsv1002963 CNV gain 25217958
nsv1004646 CNV loss 25217958
nsv1006738 CNV gain 25217958
nsv1014682 CNV loss 25217958
nsv428404 CNV loss 18775914
nsv459396 CNV gain 19166990
nsv459407 CNV loss 19166990
nsv470486 CNV loss 18288195
nsv520930 CNV gain 19592680
nsv522712 CNV gain 19592680
nsv524021 CNV loss 19592680
nsv583140 CNV gain 21841781
nsv583142 CNV loss 21841781
nsv583143 CNV gain+loss 21841781
nsv7327 OTHER inversion 18451855
nsv818082 CNV gain 17921354
nsv997248 CNV loss 25217958

Additional Variant Information for LINC01120 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC01120
Leiden Open Variation Database (LOVD)
LINC01120

SNP Genotyping and Copy Number Assays for research

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP and Variation tolerance for LINC01120 Gene

Disorders for LINC01120 Gene

Additional Disease Information for LINC01120

No disorders were found for LINC01120 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LINC01120 Gene

Publications for LINC01120 Gene

  1. A germline-specific class of small RNAs binds mammalian Piwi proteins. (PMID: 16751776) Girard A … Carmell MA (Nature 2006) 3
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3

Products for LINC01120 Gene

Sources for LINC01120 Gene