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Aliases for LINC01116 Gene

Subcategory (RNA class) for LINC01116 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for LINC01116 Gene

  • Long Intergenic Non-Protein Coding RNA 1116 2 3 5
  • Tumor Associated LncRNA Expressed In Chromosome 2 2 3
  • TALNEC2 3

External Ids for LINC01116 Gene

Previous GeneCards Identifiers for LINC01116 Gene

  • GC02M177501

Summaries for LINC01116 Gene

GeneCards Summary for LINC01116 Gene

LINC01116 (Long Intergenic Non-Protein Coding RNA 1116) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for LINC01116 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LINC01116 Gene

Genomics for LINC01116 Gene

GeneHancer (GH) Regulatory Elements for LINC01116 Gene

Promoters and enhancers for LINC01116 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH02I176638 Enhancer 1.4 VISTA UCNEbase 550.8 -0.8 -755 0.5 PKNOX1 ZSCAN4 MZF1 FEZF1 RAD21 ZNF213 ZNF366 RCOR1 KLF7 SMARCA5 GC02P176638 LINC01116 LINC01117 GC02P176666
GH02I176637 Promoter/Enhancer 1.3 Ensembl ENCODE 550.8 +0.2 218 1.4 RB1 ZSCAN4 SIN3A MZF1 RAD21 ZNF335 ZNF213 ZNF366 KLF7 EGR2 LINC01117 GC02P176638 LINC01116
GH02I176653 Enhancer 0.9 FANTOM5 ENCODE 7.6 -16.2 -16168 0.2 CTCF ZNF654 TEAD1 TRIM22 RAD21 ZNF148 GATA3 FOXK2 ZNF341 ZNF143 HOXD3 HOXD8 HOXD-AS2 HOXD9 HOXD11 LINC01116 GC02P176666 GC02P176638 LINC01117
GH02I176666 Enhancer 0.2 FANTOM5 4.8 -28.4 -28374 0.2 GC02P176666 RNU6ATAC14P LINC01116 LOC105369143
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around LINC01116 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LINC01116 Gene

Genomic Locations for LINC01116 Gene
chr2:176,629,581-176,637,931
(GRCh38/hg38)
Size:
8,351 bases
Orientation:
Minus strand
chr2:177,494,309-177,502,659
(GRCh37/hg19)

Genomic View for LINC01116 Gene

Genes around LINC01116 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LINC01116 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC01116 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINC01116 Gene

Proteins for LINC01116 Gene

Post-translational modifications for LINC01116 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC01116 Gene

Domains & Families for LINC01116 Gene

Gene Families for LINC01116 Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with LINC01116: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LINC01116 Gene

Function for LINC01116 Gene

Phenotypes for LINC01116 Gene

genes like me logo Genes that share phenotypes with LINC01116: view

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC01116 Gene

Localization for LINC01116 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC01116 Gene

Pathways & Interactions for LINC01116 Gene

SuperPathways for LINC01116 Gene

No Data Available

Interacting Proteins for LINC01116 Gene

Gene Ontology (GO) - Biological Process for LINC01116 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LINC01116 Gene

Drugs & Compounds for LINC01116 Gene

No Compound Related Data Available

Transcripts for LINC01116 Gene

mRNA/cDNA for LINC01116 Gene

Alternative Splicing Database (ASD) splice patterns (SP) for LINC01116 Gene

No ASD Table

Relevant External Links for LINC01116 Gene

GeneLoc Exon Structure for
LINC01116
ECgene alternative splicing isoforms for
LINC01116

Expression for LINC01116 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for LINC01116 Gene

mRNA differential expression in normal tissues according to GTEx for LINC01116 Gene

This gene is overexpressed in Kidney - Cortex (x4.6).

NURSA nuclear receptor signaling pathways regulating expression of LINC01116 Gene:

LINC01116
genes like me logo Genes that share expression patterns with LINC01116: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC01116 Gene

Orthologs for LINC01116 Gene

Evolution for LINC01116 Gene

ENSEMBL:
Gene Tree for LINC01116 (if available)
TreeFam:
Gene Tree for LINC01116 (if available)

No data available for Orthologs for LINC01116 Gene

Paralogs for LINC01116 Gene

No data available for Paralogs for LINC01116 Gene

Variants for LINC01116 Gene

Sequence variations from dbSNP and Humsavar for LINC01116 Gene

SNP ID Clin Chr 02 pos Variation AA Info Type
rs1000407368 -- 176,631,074(-) G/T intron_variant
rs1000459505 -- 176,630,776(-) A/G intron_variant
rs1000615089 -- 176,638,301(-) G/A/C upstream_transcript_variant
rs1000842137 -- 176,629,789(-) AAGAAG/AAG non_coding_transcript_variant
rs1001070258 -- 176,637,828(-) C/T upstream_transcript_variant

Structural Variations from Database of Genomic Variants (DGV) for LINC01116 Gene

Variant ID Type Subtype PubMed ID
nsv834464 CNV gain 17160897

Additional Variant Information for LINC01116 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC01116

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for LINC01116 Gene

Disorders for LINC01116 Gene

Additional Disease Information for LINC01116

No disorders were found for LINC01116 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LINC01116 Gene

Publications for LINC01116 Gene

  1. Long noncoding RNAs and sulforaphane: a target for chemoprevention and suppression of prostate cancer. (PMID: 28131897) Beaver LM … Ho E (The Journal of nutritional biochemistry 2017) 2 3 58
  2. The novel long non-coding RNA TALNEC2, regulates tumor cell growth and the stemness and radiation response of glioma stem cells. (PMID: 28423669) Brodie S … Brodie C (Oncotarget 2017) 2 3 58
  3. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3 58
  4. Retraction: Effect of Long Non-Coding RNA LINC01116 on Biological Behaviors of Non-Small Cell Lung Cancer Cells via the Hippo Signaling Pathway. (PMID: 29377239) Liang Y … Ma R (Journal of cellular biochemistry 2018) 3

Products for LINC01116 Gene

Sources for LINC01116 Gene

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