Aliases for LINC01114 Gene

Subcategory (RNA class) for LINC01114 Gene

lncRNA

Number of RNA Genes sources:

3 / 14

Aliases for LINC01114 Gene

  • Long Intergenic Non-Protein Coding RNA 1114 2 3 5
  • Pancreatic Cancer Associated Transcript 2 3
  • LINC01114 2 168
  • NONHSAG028805 92
  • HSALNG0017537 167
  • PANCAT 3

External Ids for LINC01114 Gene

Previous GeneCards Identifiers for LINC01114 Gene

  • GC02M105366

Summaries for LINC01114 Gene

GeneCards Summary for LINC01114 Gene

LINC01114 (Long Intergenic Non-Protein Coding RNA 1114) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for LINC01114 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LINC01114 Gene

Genomics for LINC01114 Gene

GeneHancer (GH) Regulatory Elements for LINC01114 Gene

Promoters and enhancers for LINC01114 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH02J104757 Promoter/Enhancer 1.1 Ensembl ENCODE CraniofacialAtlas 512.7 -0.9 -894 1.9 MYC TEAD4 RFX1 POLR2A HDAC2 CTCF FOS TCF12 SIN3A JUND LINC01114 ENSG00000207249 MRPS9 HMGB3P11 PANTR1
GH02J104759 Enhancer 0.3 ENCODE 500.7 -1.9 -1891 0.1 FOS CEBPG LINC01114 ENSG00000207249 HMGB3P11 PANTR1
GH02J104755 Promoter 0.6 Ensembl 13.6 +2.2 2219 0.2 SPI1 E2F6 POLR2A CTCF MYC L3MBTL2 LINC01114 ENSG00000207249 HSALNG0017537 PANTR1
GH02J104765 Enhancer 0.6 Ensembl ENCODE 10 -10.5 -10534 4.5 GATA3 REST FOS FOXP2 POLR2A ENSG00000207249 LINC01114 MRPS9 HMGB3P11 PANTR1
GH02J104774 Enhancer 0.4 Ensembl ENCODE 12.4 -15.8 -15798 3.4 ZNF513 LINC01114 ENSG00000207249 MRPS9 HMGB3P11 piR-57133-347 PANTR1
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LINC01114 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LINC01114 Gene

Genomic Locations for LINC01114 Gene
chr2:104,746,459-104,757,720
(GRCh38/hg38)
Size:
11,262 bases
Orientation:
Minus strand
chr2:105,363,095-105,374,177
(GRCh37/hg19)
Size:
11,083 bases
Orientation:
Minus strand

Genomic View for LINC01114 Gene

Genes around LINC01114 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LINC01114 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC01114 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINC01114 Gene

Proteins for LINC01114 Gene

Post-translational modifications for LINC01114 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC01114 Gene

Domains & Families for LINC01114 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LINC01114 Gene

Function for LINC01114 Gene

Phenotypes From GWAS Catalog for LINC01114 Gene

Phenotypes for LINC01114 Gene

genes like me logo Genes that share phenotypes with LINC01114: view

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC01114 Gene

Localization for LINC01114 Gene

Subcellular locations from

COMPARTMENTS
Extracellular space Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi Apparatus Nucleus Mitochondrion 0 1 2 3 4 5 Confidence
COMPARTMENTS Subcellular localization image for LINC01114 gene
Compartment Confidence
extracellular 1

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC01114 Gene

Pathways & Interactions for LINC01114 Gene

PathCards logo

SuperPathways for LINC01114 Gene

No Data Available
;

Gene Ontology (GO) - Biological Process for LINC01114 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for LINC01114 Gene

Drugs & Compounds for LINC01114 Gene

No Compound Related Data Available

Transcripts for LINC01114 Gene

mRNA/cDNA for LINC01114 Gene

15 RNACentral transcripts :
1 REFSEQ mRNAs :
3 NCBI additional mRNA sequence :
3 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
8 NONCODE transcripts :
9 LncBook transcripts :
13 LNCipedia transcripts :

Alternative Splicing Database (ASD) splice patterns (SP) for LINC01114 Gene

No ASD Table

Relevant External Links for LINC01114 Gene

GeneLoc Exon Structure for
LINC01114

Expression for LINC01114 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for LINC01114 Gene

mRNA differential expression in normal tissues according to GTEx for LINC01114 Gene

This gene is overexpressed in Brain - Hippocampus (x5.0), Brain - Cortex (x4.7), Brain - Caudate (basal ganglia) (x4.6), Brain - Anterior cingulate cortex (BA24) (x4.6), Brain - Amygdala (x4.5), Brain - Nucleus accumbens (basal ganglia) (x4.5), Brain - Putamen (basal ganglia) (x4.2), Brain - Substantia nigra (x4.0), and Brain - Frontal Cortex (BA9) (x4.0).

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for LINC01114

genes like me logo Genes that share expression patterns with LINC01114: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC01114 Gene

Orthologs for LINC01114 Gene

Evolution for LINC01114 Gene

ENSEMBL:
Gene Tree for LINC01114 (if available)
TreeFam:
Gene Tree for LINC01114 (if available)

No data available for Orthologs for LINC01114 Gene

Paralogs for LINC01114 Gene

No data available for Paralogs for LINC01114 Gene

Variants for LINC01114 Gene

Additional dbSNP identifiers (rs#s) for LINC01114 Gene

Additional Variant Information for LINC01114 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC01114

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for LINC01114 Gene

Disorders for LINC01114 Gene

Additional Disease Information for LINC01114

No disorders were found for LINC01114 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LINC01114 Gene

Publications for LINC01114 Gene

  1. Genetic polymorphisms are associated with the risk of gastric and colorectal cancers in a Han Chinese population. (PMID: 28404937) Wang N … He X (Oncotarget 2017) 3 54
  2. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3 54

Products for LINC01114 Gene

Sources for LINC01114 Gene