Aliases for LINC01104 Gene

Data sources for LINC01104 Gene:

Subcategory (RNA class) for LINC01104 Gene

lncRNA

Aliases for LINC01104 Gene

External Ids for LINC01104 Gene

Previous GeneCards Identifiers for LINC01104 Gene

  • GC02P100826

Summaries for LINC01104 Gene

GeneCards Summary for LINC01104 Gene

LINC01104 (Long Intergenic Non-Protein Coding RNA 1104) is an RNA Gene, and is affiliated with the lncRNA class. Diseases associated with LINC01104 include Glioblastoma.

Additional gene information for LINC01104 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LINC01104 Gene

Genomics for LINC01104 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for LINC01104 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH02J100207 Enhancer 0.4 Ensembl 250.7 -0.1 -88 0.8 FEZF1 RCOR1 SP7 GATA2 HSALNG0017288 LINC01104 AFF3 piR-31199-171 RF00017-3277 LONRF2
GH02J100213 Enhancer 0.7 ENCODE 0.4 +6.7 6671 1.2 CEBPA GABPA RXRA FOXA2 ZBTB33 THRB JUND SPI1 HNF4A TBX3 ENSG00000273306 REV1 AFF3 HSALNG0017288 LINC01104 RF00017-3277 LONRF2
GH02J100243 Enhancer 1 Ensembl ENCODE 0.3 +37.2 37186 5.7 MXD4 SP1 BCL11A POLR2A CTCF NONO REST FOXA2 ZNF521 IRF4 ENSG00000273306 REV1 AFF3 RF00017-3277 LINC01104 HSALNG0017288 LONRF2
GH02J100234 Enhancer 0.9 Ensembl ENCODE CraniofacialAtlas 0.3 +28.6 28612 3.8 EBF1 MYC MAX MTA3 CTCF SPI1 YY1 EED TCF12 RUNX3 AFF3 PDCL3 RF00017-3277 HSALNG0017288 LINC01104 LONRF2
GH02J100205 Enhancer 0.3 Ensembl 0.7 -2.4 -2388 0.6 ID3 RUNX3 AFF3 HSALNG0017288 LINC01104 piR-31199-171 RF00017-3277 LONRF2
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LINC01104 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for LINC01104 Gene

Latest Assembly
chr2:100,207,689-100,251,736
(GRCh38/hg38)
Size:
44,048 bases
Orientation:
Plus strand

Previous Assembly
chr2:100,824,716-100,867,946
(GRCh37/hg19 by Entrez Gene)
Size:
43,231 bases
Orientation:
Plus strand

chr2:100,824,716-100,867,946
(GRCh37/hg19 by Ensembl)
Size:
43,231 bases
Orientation:
Plus strand

Genomic View for LINC01104 Gene

Genes around LINC01104 on UCSC Golden Path with GeneCards custom track
LINC01104 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Cytogenetic band:
LINC01104 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC01104 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINC01104 Gene

Proteins for LINC01104 Gene

Post-translational modifications for LINC01104 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC01104 Gene

Domains & Families for LINC01104 Gene

Gene Families for LINC01104 Gene

genes like me logo Genes that share domains with LINC01104: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LINC01104 Gene

Function for LINC01104 Gene

Phenotypes From GWAS Catalog for LINC01104 Gene

Phenotypes for LINC01104 Gene

GenomeRNAi human phenotypes for LINC01104:
genes like me logo Genes that share phenotypes with LINC01104: view

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC01104 Gene

Localization for LINC01104 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC01104 Gene

Pathways & Interactions for LINC01104 Gene

PathCards logo

SuperPathways for LINC01104 Gene

No Data Available

Gene Ontology (GO) - Biological Process for LINC01104 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for LINC01104 Gene

Drugs & Compounds for LINC01104 Gene

No Compound Related Data Available

Transcripts for LINC01104 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for LINC01104 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS000053D37B_9606 lncRNA 3118 5

RefSeq: NR_103730,

Ensembl: ENST00000452354 (view in UCSC) ,

LncBook: HSALNT0036409,

LNCipedia: LINC01104:1,

NONCODE: NONHSAT072771.2,

URS00002BEF8D_9606 lncRNA 584 2

Ensembl: ENST00000441036 (view in UCSC) ,

LNCipedia: LINC01104:2,

URS00009C2C31_9606 lncRNA 3370 1

NONCODE: NONHSAT182258.1,

URS0001BCBB08_9606 lncRNA 3115 1

LncBook: HSALNT0036409,

URS0001BEC603_9606 lncRNA 2395 1

LncBook: HSALNT0036410,

LINC01104 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for LINC01104 Gene

1 REFSEQ mRNAs :
3 NCBI additional mRNA sequence :

Alternative Splicing Database (ASD) splice patterns (SP) for LINC01104 Gene

No ASD Table

Relevant External Links for LINC01104 Gene

GeneLoc Exon Structure for
LINC01104

Expression for LINC01104 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for LINC01104 Gene

mRNA differential expression in normal tissues according to GTEx for LINC01104 Gene

This gene is overexpressed in Testis (x8.1), Spleen (x4.5), and Brain - Cortex (x4.3).

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for LINC01104

genes like me logo Genes that share expression patterns with LINC01104: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC01104 Gene

Orthologs for LINC01104 Gene

Evolution for LINC01104 Gene

ENSEMBL:
Gene Tree for LINC01104 (if available)
TreeFam:
Gene Tree for LINC01104 (if available)

No data available for Orthologs for LINC01104 Gene

Paralogs for LINC01104 Gene

No data available for Paralogs for LINC01104 Gene

Variants for LINC01104 Gene

dbSNP identifiers (rs#s) for variants without ClinVar clinical significance for LINC01104 Gene

All consequence types are included: molecular consequences (e.g. missense, synonymous), and location-based (e.g. intron, upstream).

Structural Variations from Database of Genomic Variants (DGV) for LINC01104 Gene

Variant ID Type Subtype PubMed ID
esv3575287 CNV gain 25503493
esv3591750 CNV loss 21293372
nsv834311 CNV gain+loss 17160897

Additional Variant Information for LINC01104 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC01104

SNP Genotyping and Copy Number Assays for research

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP and Variation tolerance for LINC01104 Gene

Disorders for LINC01104 Gene

MalaCards: The human disease database

(1) MalaCards diseases for LINC01104 Gene - From: LNC

Disorder Aliases PubMed IDs
glioblastoma
  • adult glioblastoma multiforme
- elite association - COSMIC cancer census association via MalaCards

Additional Disease Information for LINC01104

genes like me logo Genes that share disorders with LINC01104: view

No data available for UniProtKB/Swiss-Prot and Genatlas for LINC01104 Gene

Publications for LINC01104 Gene

  1. LncRNA and mRNA interaction study based on transcriptome profiles reveals potential core genes in the pathogenesis of human glioblastoma multiforme. (PMID: 25378224) Yan Y … Lu Y (Journal of cancer research and clinical oncology 2015) 74
  2. Genetics of rheumatoid arthritis contributes to biology and drug discovery. (PMID: 24390342) Okada Y … Plenge RM (Nature 2014) 3
  3. High-content genome-wide RNAi screens identify regulators of parkin upstream of mitophagy. (PMID: 24270810) Hasson SA … Youle RJ (Nature 2013) 3
  4. Genome-wide association study meta-analysis identifies seven new rheumatoid arthritis risk loci. (PMID: 20453842) Stahl EA … Plenge RM (Nature genetics 2010) 3
  5. Robust associations of four new chromosome regions from genome-wide analyses of type 1 diabetes. (PMID: 17554260) Todd JA … Clayton DG (Nature genetics 2007) 3

Products for LINC01104 Gene

Sources for LINC01104 Gene