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Aliases for LINC01104 Gene
Subcategory (RNA class) for LINC01104 Gene
lncRNA
Aliases for LINC01104 Gene
External Ids for LINC01104 Gene
- HGNC: 49226
- NCBI Entrez Gene: 150577
- Ensembl: ENSG00000232084
Previous GeneCards Identifiers for LINC01104 Gene
- GC02P100826
Summaries for LINC01104 Gene
GeneCards Summary for LINC01104 Gene
LINC01104 (Long Intergenic Non-Protein Coding RNA 1104) is an RNA Gene, and is affiliated with the lncRNA class. Diseases associated with LINC01104 include Glioblastoma.
Additional gene information for LINC01104 Gene
- HGNC (49226)
- NCBI Entrez Gene (150577)
- Ensembl (ENSG00000232084)
- Open Targets Platform(ENSG00000232084)
- Monarch Initiative
- Search for LINC01104 at DataMed
- Search for LINC01104 at HumanCyc
No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LINC01104 Gene
Genomics for LINC01104 Gene
GeneHancer (GH) Regulatory Elements Pubs
Promoters and enhancers for LINC01104 Gene
| GeneHancer (GH) Identifier | GH Type | GH Score |
GH Sources | Gene Association Score | Total Score | TSS distance (kb) | Number of Genes Away | Size (kb) | Transcription Factor Binding Sites |
Gene Targets |
|---|---|---|---|---|---|---|---|---|---|---|
| GH02J100207 | Enhancer | 0.4 | Ensembl | 250.7 | -0.1 | -88 | 0.8 | FEZF1 RCOR1 SP7 GATA2 | HSALNG0017288 LINC01104 AFF3 piR-31199-171 RF00017-3277 LONRF2 | |
| GH02J100213 | Enhancer | 0.7 | ENCODE | 0.4 | +6.7 | 6671 | 1.2 | CEBPA GABPA RXRA FOXA2 ZBTB33 THRB JUND SPI1 HNF4A TBX3 | ENSG00000273306 REV1 AFF3 HSALNG0017288 LINC01104 RF00017-3277 LONRF2 | |
| GH02J100243 | Enhancer | 1 | Ensembl ENCODE | 0.3 | +37.2 | 37186 | 5.7 | MXD4 SP1 BCL11A POLR2A CTCF NONO REST FOXA2 ZNF521 IRF4 | ENSG00000273306 REV1 AFF3 RF00017-3277 LINC01104 HSALNG0017288 LONRF2 | |
| GH02J100234 | Enhancer | 0.9 | Ensembl ENCODE CraniofacialAtlas | 0.3 | +28.6 | 28612 | 3.8 | EBF1 MYC MAX MTA3 CTCF SPI1 YY1 EED TCF12 RUNX3 | AFF3 PDCL3 RF00017-3277 HSALNG0017288 LINC01104 LONRF2 | |
| GH02J100205 | Enhancer | 0.3 | Ensembl | 0.7 | -2.4 | -2388 | 0.6 | ID3 RUNX3 | AFF3 HSALNG0017288 LINC01104 piR-31199-171 RF00017-3277 LONRF2 |
- Elite GeneHancer and/or Elite GeneHancer-gene association
Download GeneHancer data from 2017 publication |
Request up-to-date GeneHancer data (full dataset)
GeneHancers around LINC01104 on the GeneHancer Hub at the UCSC Golden Path
Genomic Locations for LINC01104 Gene
Latest Assembly
- chr2:100,207,689-100,251,736
- (GRCh38/hg38)
- Size:
- 44,048 bases
- Orientation:
- Plus strand
Previous Assembly
- chr2:100,824,716-100,867,946
- (GRCh37/hg19 by Entrez Gene)
- Size:
- 43,231 bases
- Orientation:
- Plus strand
- chr2:100,824,716-100,867,946
- (GRCh37/hg19 by Ensembl)
- Size:
- 43,231 bases
- Orientation:
- Plus strand
Genomic View for LINC01104 Gene
Genes around LINC01104 on UCSC Golden Path with GeneCards custom track
LINC01104 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path
- Cytogenetic band:
-
- 2q11.2 by HGNC
- 2q11.2 by Entrez Gene
- 2q11.2 by Ensembl
LINC01104 Gene in genomic location: bands according to
Ensembl, locations according to GeneLoc
(and/or Entrez Gene and/or Ensembl if different)
Genomic Neighborhood
• Exon Structure
• Gene Density
RefSeq DNA sequence for LINC01104 Gene
Proteins for LINC01104 Gene
Post-translational modifications for LINC01104 Gene
No Post-translational modifications
No data available for DME Specific Peptides for LINC01104 Gene
Domains & Families for LINC01104 Gene
Gene Families for LINC01104 Gene
No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LINC01104 Gene
Function for LINC01104 Gene
Phenotypes From GWAS Catalog for LINC01104 Gene
Phenotypes for LINC01104 Gene
- GenomeRNAi human phenotypes for LINC01104:
CRISPR products for research
Inhibitory RNAs for research
Clone products for research
Cell Lines for research
No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC01104 Gene
Localization for LINC01104 Gene
No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC01104 Gene
Transcripts for LINC01104 Gene
Non-coding RNA (ncRNA) Transcripts from RNAcentral for LINC01104 Gene
| RNAcentral Transcript ID | Subcategory | Length (nts) | # of Sources | Source Identifiers and Annotations |
|---|---|---|---|---|
| URS000053D37B_9606 | lncRNA | 3118 | 5 |
RefSeq: NR_103730, Ensembl: ENST00000452354 (view in UCSC) , LncBook: HSALNT0036409, LNCipedia: LINC01104:1, NONCODE: NONHSAT072771.2, |
| URS00002BEF8D_9606 | lncRNA | 584 | 2 |
Ensembl: ENST00000441036 (view in UCSC) , LNCipedia: LINC01104:2, |
| URS00009C2C31_9606 | lncRNA | 3370 | 1 |
NONCODE: NONHSAT182258.1, |
| URS0001BCBB08_9606 | lncRNA | 3115 | 1 |
LncBook: HSALNT0036409, |
| URS0001BEC603_9606 | lncRNA | 2395 | 1 |
LncBook: HSALNT0036410, |
LINC01104 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path
Additional transcripts not in RNAcentral for LINC01104 Gene
- 1 REFSEQ mRNAs :
- 3 NCBI additional mRNA sequence :
CRISPR products for research
Inhibitory RNAs for research
Clone products for research
Relevant External Links for LINC01104 Gene
- GeneLoc Exon Structure for
- LINC01104
Expression for LINC01104 Gene
mRNA differential expression in normal tissues according to GTEx for LINC01104 Gene
This gene is overexpressed in Testis (x8.1), Spleen (x4.5), and Brain - Cortex (x4.3).
Transcriptomic regulation report from SPP (The Signaling Pathways Project) for LINC01104
Gene Expression Assays for research
No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC01104 Gene
Orthologs for LINC01104 Gene
No data available for Orthologs for LINC01104 Gene
Paralogs for LINC01104 Gene
No data available for Paralogs for LINC01104 Gene
Variants for LINC01104 Gene
All consequence types are included: molecular consequences (e.g. missense, synonymous), and location-based (e.g. intron, upstream).
| Variant ID | Type | Subtype | PubMed ID |
|---|---|---|---|
| esv3575287 | CNV | gain | 25503493 |
| esv3591750 | CNV | loss | 21293372 |
| nsv834311 | CNV | gain+loss | 17160897 |
Additional Variant Information for LINC01104 Gene
- SNPedia medical, phenotypic, and genealogical associations of SNPs for
- LINC01104
SNP Genotyping and Copy Number Assays for research
No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP and Variation tolerance for LINC01104 Gene
Disorders for LINC01104 Gene
| Disorder | Aliases | PubMed IDs |
|---|---|---|
| glioblastoma |
|
Search LINC01104 in MalaCards
View complete list of genes associated with diseases
Additional Disease Information for LINC01104
- Atlas
- ATLAS of Genetics and Cytogenetics in Oncology and Haematology
- Open Targets Platform
- Open Targets Platform
No data available for UniProtKB/Swiss-Prot and Genatlas for LINC01104 Gene
Publications for LINC01104 Gene
- LncRNA and mRNA interaction study based on transcriptome profiles reveals potential core genes in the pathogenesis of human glioblastoma multiforme. (PMID: 25378224) Yan Y … Lu Y (Journal of cancer research and clinical oncology 2015) 74
- Genetics of rheumatoid arthritis contributes to biology and drug discovery. (PMID: 24390342) Okada Y … Plenge RM (Nature 2014) 3
- High-content genome-wide RNAi screens identify regulators of parkin upstream of mitophagy. (PMID: 24270810) Hasson SA … Youle RJ (Nature 2013) 3
- Genome-wide association study meta-analysis identifies seven new rheumatoid arthritis risk loci. (PMID: 20453842) Stahl EA … Plenge RM (Nature genetics 2010) 3
- Robust associations of four new chromosome regions from genome-wide analyses of type 1 diabetes. (PMID: 17554260) Todd JA … Clayton DG (Nature genetics 2007) 3
Products for LINC01104 Gene
- Browse OriGene Antibodies
- Custom Antibody Services
- Browse OriGene ELISA Kits
- Custom Assay Services
- Search Origene for Purified Proteins, MassSpec and Protein Over-expression Lysates for LINC01104
- Origene Custom Protein Services for LINC01104
- Browse OriGene Inhibitory RNA Products For LINC01104
- Browse OriGene qPCR primer pairs and template standards
- Browse CRISPR knockouts for LINC01104
- Custom cloning services - gene synthesis, subcloning, mutagenesis, variant library, vector shuttling
- Browse OriGene miRNA Products For LINC01104
- Browse Sino Biological cDNA Clones
- Browse Sino Biological Recombinant Proteins
- Browse Sino Biological Cell Lysates
- Browse Sino Biological Antibodies
- Browse Sino Biological Assays
- Browse ELISA Kits
- Browse CRO Services
- High-throughput Antibody Production Service
- Protein Production Service
- Epitope Tag Antibodies & Reporter Protein Antibodies
- Lentiviral ORF Clones
- Novus Biologicals proteins for LINC01104
- Browse Antibodies
- Browse Peptides and Proteins
- Browse Lysates
- Browse ELISA Kits
- antibodies-online: Search results for available LOC150577 related products ranked by validation data
- antibodies-online: Search results for available LOC150577 related products ranked by validation data
- antibodies-online: Search results for available LOC150577 related products ranked by validation data
- Browse GeneCopoeia Cell Lines
- Search GeneCopoeia for knockout CRISPR/Cas9 clones, lentivirus, and/or AAV products for LINC01104
- Search GeneCopoeia for ORF cDNA, lentivirus, AAV viral particles, and/or promoter clone products for LINC01104
- Search GeneCopoeia for miRNA 3'UTR Target clone products for LINC01104
- Search GeneCopoeia for shRNA, lentivirus, and/or AAV clone products for LINC01104
Sources for LINC01104 Gene
- (1) GeneCards
- (2) HGNC
- (3) NCBI Entrez Gene
- (4) UniProtKB/Swiss-Prot
- (5) Ensembl
- (6) OMIM® (Updated: 05-Mar-2021)
- (7) GeneLoc
- (8) Gene Wiki
- (9) UCSC
- (10) PhosphoSitePlus
- (11) Cell Signaling Technology
- (12) GO
- (13) UniProtKB/TrEMBL
- (14) InterPro
- (15) ProtoNet
- (16) Blocks
- (17) MGI
- (18) IUBMB
- (19) KEGG
- (20) MINT
- (21) STRING
- (22) IntAct
- (23) Novoseek
- (24) PharmGKB
- (25) DrugBank
- (26) HMDB
- (27) ASD
- (28) SAGE
- (29) SOURCE
- (30) HomoloGene
- (31) PanEnsembl
- (32) euGenes
- (33) SGD
- (34) FlyBase
- (35) WormBase
- (36) Pseudogene
- (37) DGV
- (38) dbSNP
- (39) GenAtlas
- (40) HGMD
- (41) GAD
- (42) BGMUT
- (43) HuGE
- (44) Atlas
- (45) GenBank
- (46) HORDE
- (47) HUGE
- (48) IMGT
- (49) Leiden
- (50) miRBase
- (51) DME
- (52) OriGene
- (53) PubMed
- (54) R&D Systems
- (55) TGDB
- (56) Tocris
- (57) Abcam
- (58) Novus Biologicals
- (59) ProSpec
- (60) Sino Biological
- (61) GenScript
- (62) Qiagen
- (63) OCA
- (64) Proteopedia
- (65) MOPED
- (66) neXtProt
- (67) Reactome
- (68) GeneGo (Thomson Reuters)
- (69) DISEASES
- (70) SIMAP
- (71) GenomeRNAi
- (72) LifeMap
- (73) miRTarBase
- (74) MalaCards
- (75) Invitrogen
- (76) BitterDB
- (77) ESI-BIO
- (78) RefSeq
- (79) BioSystems
- (80) MaxQB
- (81) IUPHAR
- (82) BioGPS
- (83) Illumina
- (84) COMPARTMENTS
- (85) HOMER
- (86) PaxDb
- (87) ApexBio
- (88) Addgene
- (89) antibodies-online
- (90) CYP
- (91) NONCODE
- (92) TreeFam
- (93) PathCards
- (94) GeneReviews
- (95) GeneTex
- (96) Taconic Biosciences
- (97) GTEx
- (98) ProteomicsDB
- (99) SCBT
- (100) DGIdb
- (101) ClinicalTrials
- (102) RVIS
- (103) SIGNOR
- (104) diseasecard
- (105) NIH Rare Diseases
- (106) Orphanet
- (107) UMLS
- (108) GTR
- (109) Disease Ontology
- (110) MedlinePlus Genetics
- (111) MeSH
- (112) MedlinePlus
- (113) CDC
- (114) NINDS
- (115) NCBI Bookshelf
- (116) ClinVar
- (117) Gene Damage Index
- (118) HPO
- (119) UDN
- (120) VISTA
- (121) FANTOM5
- (122) ENCODE
- (123) ProSci
- (124) Horizon
- (125) The Signaling Pathways Project (SPP)
- (126) IID
- (127) VectorBuilder
- (128) SNPedia
- (129) BRCA Exchange
- (130) CIViC
- (131) ProteoGenix
- (132) dbSUPER
- (133) TISSUES
- (134) Gene ORGANizer
- (135) abm
- (136) Human Protein Atlas
- (137) GWAS Catalog
- (138) Monarch Initiative
- (139) DataMed
- (140) HumanCyc
- (141) UCNEbase
- (142) EPDnew
- (143) Applied Biosystems
- (144) GlyConnect
- (145) Aminode
- (146) GeneCopoeia
- (147) GPS-Prot
- (148) RNAcentral
- (149) LncRNADisease
- (150) LOVD
- (151) miR2Disease
- (152) DiseaseEnhancer
- (153) Boster Bio
- (154) Biorbyt
- (155) Biocompare
- (156) Mastermind
- (157) CTD^2 Dashboard
- (158) CraniofacialAtlas
- (159) GeneImprint
- (160) Synthego
- (161) ENA
- (162) GtRNAdb
- (163) LncBase
- (164) LncBook
- (165) LNCipedia
- (166) Modomics
- (167) PDBe
- (168) Rfam
- (169) SILVA
- (170) snOPY
- (171) SRPDB
- (172) GENCODE
- (173) TarBase
- (174) Open Targets Platform
- (175) 5SRRNADB
- (176) snoDB
- (177) MirGeneDB