Aliases for LINC01102 Gene

Data sources for LINC01102 Gene:

Subcategory (RNA class) for LINC01102 Gene

lncRNA

Aliases for LINC01102 Gene

External Ids for LINC01102 Gene

Previous GeneCards Identifiers for LINC01102 Gene

  • GC02P105053

Summaries for LINC01102 Gene

GeneCards Summary for LINC01102 Gene

LINC01102 (Long Intergenic Non-Protein Coding RNA 1102) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for LINC01102 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LINC01102 Gene

Genomics for LINC01102 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for LINC01102 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH02J104431 Promoter/Enhancer 2.3 VISTA UCNEbase EPDnew Ensembl ENCODE CraniofacialAtlas dbSUPER 250.7 +3.1 3054 4 ELF1 FOXA2 RXRA YY1 GATA3 BATF FOXA1 ZNF189 RAD21 MAX LINC01102 LINC01831 POU3F3
GH02J104427 Promoter/Enhancer 1.5 VISTA Ensembl CraniofacialAtlas dbSUPER 250.7 -0.7 -691 3.2 FOXA2 CBX2 POLR2A EZH2 YY1 CTCF LINC01102 LINC01831 ENSG00000287793 POU3F3
GH02J104426 Enhancer 0.3 Ensembl dbSUPER 0.7 -3.0 -3029 0.2 ENSG00000287793 LINC01102 LINC01831 POU3F3
GH02J104476 Enhancer 0.8 Ensembl 0.3 +46.8 46771 1 CEBPA KDM6A THAP11 ZNF511 FOXA2 MAFF SAP130 ZSCAN9 TEAD3 DMAP1 ENSG00000207249 HSALNG0017516 lnc-POU3F3-14 lnc-POU3F3-13 LINC01103 LINC01102 POU3F3
GH02J104445 Enhancer 0.4 Ensembl dbSUPER 0.4 +14.4 14371 0.2 FOS LINC01102 LINC01831 POU3F3
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LINC01102 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for LINC01102 Gene

Latest Assembly
chr2:104,430,130-104,532,747
(GRCh38/hg38)
Size:
102,618 bases
Orientation:
Plus strand

Previous Assembly
chr2:105,050,805-105,129,215
(GRCh37/hg19 by Entrez Gene)
Size:
78,411 bases
Orientation:
Plus strand

chr2:105,049,725-105,137,290
(GRCh37/hg19 by Ensembl)
Size:
87,566 bases
Orientation:
Plus strand

Genomic View for LINC01102 Gene

Genes around LINC01102 on UCSC Golden Path with GeneCards custom track
LINC01102 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Cytogenetic band:
LINC01102 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC01102 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINC01102 Gene

Proteins for LINC01102 Gene

Post-translational modifications for LINC01102 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC01102 Gene

Domains & Families for LINC01102 Gene

Gene Families for LINC01102 Gene

genes like me logo Genes that share domains with LINC01102: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LINC01102 Gene

Function for LINC01102 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC01102 Gene

Localization for LINC01102 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC01102 Gene

Pathways & Interactions for LINC01102 Gene

PathCards logo

SuperPathways for LINC01102 Gene

No Data Available

Gene Ontology (GO) - Biological Process for LINC01102 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for LINC01102 Gene

Drugs & Compounds for LINC01102 Gene

No Compound Related Data Available

Transcripts for LINC01102 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for LINC01102 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS0000479E2C_9606 lncRNA 2128 3

Ensembl: ENST00000429464 (view in UCSC) ,

LNCipedia: LINC01102:7,

NONCODE: NONHSAT072915.2,

URS0000EEC4E2_9606 lncRNA 3830 1

Ensembl: ENST00000451400 (view in UCSC) ,

URS0000EEEABC_9606 lncRNA 2516 1

Ensembl: ENST00000659788 (view in UCSC) ,

URS0000EF0A2F_9606 lncRNA 2492 1

Ensembl: ENST00000667436 (view in UCSC) ,

URS0000EF2206_9606 lncRNA 2429 1

Ensembl: ENST00000666200 (view in UCSC) ,

LINC01102 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for LINC01102 Gene

8 NCBI additional mRNA sequence :

Alternative Splicing Database (ASD) splice patterns (SP) for LINC01102 Gene

No ASD Table

Relevant External Links for LINC01102 Gene

GeneLoc Exon Structure for
LINC01102

Expression for LINC01102 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for LINC01102 Gene

mRNA differential expression in normal tissues according to GTEx for LINC01102 Gene

This gene is overexpressed in Brain - Spinal cord (cervical c-1) (x7.7), Brain - Substantia nigra (x5.6), Brain - Cortex (x5.2), Brain - Frontal Cortex (BA9) (x5.2), Brain - Anterior cingulate cortex (BA24) (x4.9), and Brain - Hippocampus (x4.9).

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for LINC01102

genes like me logo Genes that share expression patterns with LINC01102: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC01102 Gene

Orthologs for LINC01102 Gene

Evolution for LINC01102 Gene

ENSEMBL:
Gene Tree for LINC01102 (if available)
TreeFam:
Gene Tree for LINC01102 (if available)

No data available for Orthologs for LINC01102 Gene

Paralogs for LINC01102 Gene

No data available for Paralogs for LINC01102 Gene

Variants for LINC01102 Gene

dbSNP identifiers (rs#s) for variants without ClinVar clinical significance for LINC01102 Gene

All consequence types are included: molecular consequences (e.g. missense, synonymous), and location-based (e.g. intron, upstream).

Additional Variant Information for LINC01102 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC01102

SNP Genotyping and Copy Number Assays for research

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for LINC01102 Gene

Disorders for LINC01102 Gene

Additional Disease Information for LINC01102

No disorders were found for LINC01102 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LINC01102 Gene

Publications for LINC01102 Gene

  1. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K … Sugano S (Genome research 2006) 3
  2. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3
  3. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3

Products for LINC01102 Gene

Sources for LINC01102 Gene