LINC01102 Gene (RNA Gene)

Long Intergenic Non-Protein Coding RNA 1102

GC02P104433
GIFtS:
15

Aliases for LINC01102 Gene

Subcategory (RNA class) for LINC01102 Gene

lncRNA

Number of RNA Genes sources:

3 / 14

Aliases for LINC01102 Gene

  • Long Intergenic Non-Protein Coding RNA 1102 2 3 5
  • LINC01102 2 168
  • HSALNG0017515 167
  • NONHSAG028795 92

External Ids for LINC01102 Gene

Previous GeneCards Identifiers for LINC01102 Gene

  • GC02P105053

Summaries for LINC01102 Gene

GeneCards Summary for LINC01102 Gene

LINC01102 (Long Intergenic Non-Protein Coding RNA 1102) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for LINC01102 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LINC01102 Gene

Genomics for LINC01102 Gene

GeneHancer (GH) Regulatory Elements for LINC01102 Gene

Promoters and enhancers for LINC01102 Gene
GeneHancer (GH) Identifier GH Type GH
Score		 GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites		 Gene Targets
GH02J104427 Enhancer 1.2 VISTA Ensembl CraniofacialAtlas dbSUPER 500.7 -0.7 -691 3.2 EP300 FOXA2 CTCF CBX2 RAD21 POLR2A YY1 EZH2 LINC01102 LINC01831 ENSG00000287793
GH02J104434 Promoter/Enhancer 1.5 Ensembl ENCODE CraniofacialAtlas dbSUPER 0.7 +4.5 4470 1.2 EP300 TEAD4 MXI1 FOXA2 ZBTB17 NR3C1 YY1 ELF1 BATF FOXA1 LINC01102 lnc-POU3F3-14
GH02J104431 Promoter/Enhancer 1.2 VISTA UCNEbase Ensembl dbSUPER 0.7 +2.1 2055 2 EP300 GATA3 POLR2A LINC01102 lnc-POU3F3-14
GH02J104433 Promoter/Enhancer 0.6 Ensembl dbSUPER 0.7 +3.5 3471 0.4 CTCF LINC01831 LINC01102 lnc-POU3F3-14
GH02J104476 Enhancer 0.8 Ensembl 0.3 +46.6 46621 0.6 EP300 NCOR1 KDM6A TEAD1 FOXA2 ZSCAN9 MAFF SAP130 MAFK ARNT ENSG00000207249 lnc-POU3F3-14 lnc-POU3F3-13 LINC01102
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LINC01102 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LINC01102 Gene

Genomic Locations for LINC01102 Gene
chr2:104,430,130-104,532,747
(GRCh38/hg38)
Size:
102,618 bases
Orientation:
Plus strand
chr2:105,049,725-105,137,290
(GRCh37/hg19)
Size:
87,566 bases
Orientation:
Plus strand

Genomic View for LINC01102 Gene

Genes around LINC01102 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LINC01102 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC01102 Gene
GeneLoc Logo Genomic Neighborhood • Exon Structure • Gene Density

RefSeq DNA sequence for LINC01102 Gene

Proteins for LINC01102 Gene

Products:

  1. Antibody
  2. Protein
  3. Assay

Post-translational modifications for LINC01102 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC01102 Gene

Domains & Families for LINC01102 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LINC01102 Gene

Function for LINC01102 Gene

Products:

  1. Animal Model
  2. CRISPR
  3. miRNA
  4. Inhibitory RNA
  5. Clone
  6. Cell Line

Phenotypes From GWAS Catalog for LINC01102 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC01102 Gene

Localization for LINC01102 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC01102 Gene

Pathways & Interactions for LINC01102 Gene

PathCards logo

SuperPathways for LINC01102 Gene

No Data Available
;

Gene Ontology (GO) - Biological Process for LINC01102 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for LINC01102 Gene

Drugs & Compounds for LINC01102 Gene

Products:

  1. Drug
No Compound Related Data Available

Transcripts for LINC01102 Gene

Products:

  1. CRISPR
  2. miRNA
  3. Inhibitory RNA
  4. Clone

mRNA/cDNA for LINC01102 Gene

61 RNACentral transcripts :
1 REFSEQ mRNAs :
8 NCBI additional mRNA sequence :
35 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
13 NONCODE transcripts :
12 LncBook transcripts :
26 LNCipedia transcripts :

Alternative Splicing Database (ASD) splice patterns (SP) for LINC01102 Gene

No ASD Table

Relevant External Links for LINC01102 Gene

GeneLoc Exon Structure for
LINC01102

Expression for LINC01102 Gene

Products:

  1. Primer
  2. Gene Expression Assay

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for LINC01102 Gene

mRNA expression in normal human tissues for LINC01102 Gene
mRNA expression by GTEx for LINC01102 Gene

mRNA differential expression in normal tissues according to GTEx for LINC01102 Gene

This gene is overexpressed in Brain - Spinal cord (cervical c-1) (x7.7), Brain - Substantia nigra (x5.6), Brain - Cortex (x5.2), Brain - Frontal Cortex (BA9) (x5.2), Brain - Anterior cingulate cortex (BA24) (x4.9), and Brain - Hippocampus (x4.9).

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for LINC01102

genes like me logo Genes that share expression patterns with LINC01102: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC01102 Gene

Orthologs for LINC01102 Gene

Evolution for LINC01102 Gene

ENSEMBL:
Gene Tree for LINC01102 (if available)
TreeFam:
Gene Tree for LINC01102 (if available)

No data available for Orthologs for LINC01102 Gene

Paralogs for LINC01102 Gene

No data available for Paralogs for LINC01102 Gene

Variants for LINC01102 Gene

Products:

  1. SNP Genotyping and Copy Number Assay

Additional dbSNP identifiers (rs#s) for LINC01102 Gene

Additional Variant Information for LINC01102 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC01102

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for LINC01102 Gene

Disorders for LINC01102 Gene

Additional Disease Information for LINC01102

ATLAS of Genetics and Cytogenetics in Oncology and Haematology

No disorders were found for LINC01102 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LINC01102 Gene

Publications for LINC01102 Gene

  1. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K … Sugano S (Genome research 2006) 3 54
  2. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3 54
  3. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3 54

ExternalLinks

View latest publications for LINC01102 gene in Mastermind

Products for LINC01102 Gene

Sources for LINC01102 Gene