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Aliases for LINC01102 Gene
Subcategory (RNA class) for LINC01102 Gene
lncRNA
Aliases for LINC01102 Gene
External Ids for LINC01102 Gene
- HGNC: 27165
- NCBI Entrez Gene: 150568
- Ensembl: ENSG00000235597
Previous GeneCards Identifiers for LINC01102 Gene
- GC02P105053
Summaries for LINC01102 Gene
GeneCards Summary for LINC01102 Gene
LINC01102 (Long Intergenic Non-Protein Coding RNA 1102) is an RNA Gene, and is affiliated with the lncRNA class.
Additional gene information for LINC01102 Gene
- HGNC (27165)
- NCBI Entrez Gene (150568)
- Ensembl (ENSG00000235597)
- Open Targets Platform(ENSG00000235597)
- Search for LINC01102 at DataMed
- Search for LINC01102 at HumanCyc
No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LINC01102 Gene
Genomics for LINC01102 Gene
GeneHancer (GH) Regulatory Elements Pubs
Promoters and enhancers for LINC01102 Gene
| GeneHancer (GH) Identifier | GH Type | GH Score |
GH Sources | Gene Association Score | Total Score | TSS distance (kb) | Number of Genes Away | Size (kb) | Transcription Factor Binding Sites |
Gene Targets |
|---|---|---|---|---|---|---|---|---|---|---|
| GH02J104431 | Promoter/Enhancer | 2.3 | VISTA UCNEbase EPDnew Ensembl ENCODE CraniofacialAtlas dbSUPER | 250.7 | +3.1 | 3054 | 4 | ELF1 FOXA2 RXRA YY1 GATA3 BATF FOXA1 ZNF189 RAD21 MAX | LINC01102 LINC01831 POU3F3 | |
| GH02J104427 | Promoter/Enhancer | 1.5 | VISTA Ensembl CraniofacialAtlas dbSUPER | 250.7 | -0.7 | -691 | 3.2 | FOXA2 CBX2 POLR2A EZH2 YY1 CTCF | LINC01102 LINC01831 ENSG00000287793 POU3F3 | |
| GH02J104426 | Enhancer | 0.3 | Ensembl dbSUPER | 0.7 | -3.0 | -3029 | 0.2 | ENSG00000287793 LINC01102 LINC01831 POU3F3 | ||
| GH02J104476 | Enhancer | 0.8 | Ensembl | 0.3 | +46.8 | 46771 | 1 | CEBPA KDM6A THAP11 ZNF511 FOXA2 MAFF SAP130 ZSCAN9 TEAD3 DMAP1 | ENSG00000207249 HSALNG0017516 lnc-POU3F3-14 lnc-POU3F3-13 LINC01103 LINC01102 POU3F3 | |
| GH02J104445 | Enhancer | 0.4 | Ensembl dbSUPER | 0.4 | +14.4 | 14371 | 0.2 | FOS | LINC01102 LINC01831 POU3F3 |
- Elite GeneHancer and/or Elite GeneHancer-gene association
Download GeneHancer data from 2017 publication |
Request up-to-date GeneHancer data (full dataset)
GeneHancers around LINC01102 on the GeneHancer Hub at the UCSC Golden Path
Genomic Locations for LINC01102 Gene
Latest Assembly
- chr2:104,430,130-104,532,747
- (GRCh38/hg38)
- Size:
- 102,618 bases
- Orientation:
- Plus strand
Previous Assembly
- chr2:105,050,805-105,129,215
- (GRCh37/hg19 by Entrez Gene)
- Size:
- 78,411 bases
- Orientation:
- Plus strand
- chr2:105,049,725-105,137,290
- (GRCh37/hg19 by Ensembl)
- Size:
- 87,566 bases
- Orientation:
- Plus strand
Genomic View for LINC01102 Gene
Genes around LINC01102 on UCSC Golden Path with GeneCards custom track
LINC01102 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path
- Cytogenetic band:
-
- 2q12.1 by HGNC
- 2q12.1 by Entrez Gene
- 2q12.1 by Ensembl
LINC01102 Gene in genomic location: bands according to
Ensembl, locations according to GeneLoc
(and/or Entrez Gene and/or Ensembl if different)
Genomic Neighborhood
• Exon Structure
• Gene Density
RefSeq DNA sequence for LINC01102 Gene
Proteins for LINC01102 Gene
Post-translational modifications for LINC01102 Gene
No Post-translational modifications
No data available for DME Specific Peptides for LINC01102 Gene
Domains & Families for LINC01102 Gene
Gene Families for LINC01102 Gene
No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LINC01102 Gene
Function for LINC01102 Gene
Phenotypes From GWAS Catalog for LINC01102 Gene
CRISPR products for research
Inhibitory RNAs for research
- Origene shrna and RNAi products in human, mouse, rat for LINC01102
- Browse OriGene Inhibitory RNA Products For LINC01102
Clone products for research
Cell Lines for research
No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC01102 Gene
Localization for LINC01102 Gene
No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC01102 Gene
Transcripts for LINC01102 Gene
Non-coding RNA (ncRNA) Transcripts from RNAcentral for LINC01102 Gene
| RNAcentral Transcript ID | Subcategory | Length (nts) | # of Sources | Source Identifiers and Annotations |
|---|---|---|---|---|
| URS0000479E2C_9606 | lncRNA | 2128 | 3 |
Ensembl: ENST00000429464 (view in UCSC) , LNCipedia: LINC01102:7, NONCODE: NONHSAT072915.2, |
| URS0000EEC4E2_9606 | lncRNA | 3830 | 1 |
Ensembl: ENST00000451400 (view in UCSC) , |
| URS0000EEEABC_9606 | lncRNA | 2516 | 1 |
Ensembl: ENST00000659788 (view in UCSC) , |
| URS0000EF0A2F_9606 | lncRNA | 2492 | 1 |
Ensembl: ENST00000667436 (view in UCSC) , |
| URS0000EF2206_9606 | lncRNA | 2429 | 1 |
Ensembl: ENST00000666200 (view in UCSC) , |
LINC01102 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path
Additional transcripts not in RNAcentral for LINC01102 Gene
- 8 NCBI additional mRNA sequence :
CRISPR products for research
Inhibitory RNAs for research
- Origene shrna and RNAi products in human, mouse, rat for LINC01102
- Browse OriGene Inhibitory RNA Products For LINC01102
Clone products for research
Relevant External Links for LINC01102 Gene
- GeneLoc Exon Structure for
- LINC01102
Expression for LINC01102 Gene
mRNA differential expression in normal tissues according to GTEx for LINC01102 Gene
This gene is overexpressed in Brain - Spinal cord (cervical c-1) (x7.7), Brain - Substantia nigra (x5.6), Brain - Cortex (x5.2), Brain - Frontal Cortex (BA9) (x5.2), Brain - Anterior cingulate cortex (BA24) (x4.9), and Brain - Hippocampus (x4.9).
Transcriptomic regulation report from SPP (The Signaling Pathways Project) for LINC01102
Gene Expression Assays for research
No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC01102 Gene
Orthologs for LINC01102 Gene
No data available for Orthologs for LINC01102 Gene
Paralogs for LINC01102 Gene
No data available for Paralogs for LINC01102 Gene
Variants for LINC01102 Gene
All consequence types are included: molecular consequences (e.g. missense, synonymous), and location-based (e.g. intron, upstream).
Additional Variant Information for LINC01102 Gene
- SNPedia medical, phenotypic, and genealogical associations of SNPs for
- LINC01102
SNP Genotyping and Copy Number Assays for research
No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for LINC01102 Gene
Disorders for LINC01102 Gene
Additional Disease Information for LINC01102
- Atlas
- ATLAS of Genetics and Cytogenetics in Oncology and Haematology
- Open Targets Platform
- Open Targets Platform
No disorders were found for LINC01102 Gene.
No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LINC01102 Gene
Publications for LINC01102 Gene
- Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K … Sugano S (Genome research 2006) 3
- Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3
- Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3
Products for LINC01102 Gene
- Browse OriGene Antibodies
- Custom Antibody Services
- Browse OriGene ELISA Kits
- Custom Assay Services
- Search Origene for Purified Proteins, MassSpec and Protein Over-expression Lysates for LINC01102
- Origene Custom Protein Services for LINC01102
- Origene shrna and RNAi products in human, mouse, rat for LINC01102
- Browse OriGene Inhibitory RNA Products For LINC01102
- Browse OriGene qPCR primer pairs and template standards
- Browse CRISPR knockouts for LINC01102
- Custom cloning services - gene synthesis, subcloning, mutagenesis, variant library, vector shuttling
- Browse OriGene miRNA Products For LINC01102
- Browse Sino Biological cDNA Clones
- Browse Sino Biological Recombinant Proteins
- Browse Sino Biological Cell Lysates
- Browse Sino Biological Antibodies
- Browse Sino Biological Assays
- Browse ELISA Kits
- Browse CRO Services
- High-throughput Antibody Production Service
- Protein Production Service
- Epitope Tag Antibodies & Reporter Protein Antibodies
- Lentiviral ORF Clones
- antibodies-online: Search results for available LOC150568 related products ranked by validation data
- antibodies-online: Search results for available LOC150568 related products ranked by validation data
- antibodies-online: Search results for available LOC150568 related products ranked by validation data
- Browse GeneCopoeia Cell Lines
- Search GeneCopoeia for knockout CRISPR/Cas9 clones, lentivirus, and/or AAV products for LINC01102
- Search GeneCopoeia for ORF cDNA, lentivirus, AAV viral particles, and/or promoter clone products for LINC01102
- Search GeneCopoeia for miRNA 3'UTR Target clone products for LINC01102
- Search GeneCopoeia for shRNA, lentivirus, and/or AAV clone products for LINC01102
Sources for LINC01102 Gene
- (1) GeneCards
- (2) HGNC
- (3) NCBI Entrez Gene
- (4) UniProtKB/Swiss-Prot
- (5) Ensembl
- (6) OMIM® (Updated: 05-Mar-2021)
- (7) GeneLoc
- (8) Gene Wiki
- (9) UCSC
- (10) PhosphoSitePlus
- (11) Cell Signaling Technology
- (12) GO
- (13) UniProtKB/TrEMBL
- (14) InterPro
- (15) ProtoNet
- (16) Blocks
- (17) MGI
- (18) IUBMB
- (19) KEGG
- (20) MINT
- (21) STRING
- (22) IntAct
- (23) Novoseek
- (24) PharmGKB
- (25) DrugBank
- (26) HMDB
- (27) ASD
- (28) SAGE
- (29) SOURCE
- (30) HomoloGene
- (31) PanEnsembl
- (32) euGenes
- (33) SGD
- (34) FlyBase
- (35) WormBase
- (36) Pseudogene
- (37) DGV
- (38) dbSNP
- (39) GenAtlas
- (40) HGMD
- (41) GAD
- (42) BGMUT
- (43) HuGE
- (44) Atlas
- (45) GenBank
- (46) HORDE
- (47) HUGE
- (48) IMGT
- (49) Leiden
- (50) miRBase
- (51) DME
- (52) OriGene
- (53) PubMed
- (54) R&D Systems
- (55) TGDB
- (56) Tocris
- (57) Abcam
- (58) Novus Biologicals
- (59) ProSpec
- (60) Sino Biological
- (61) GenScript
- (62) Qiagen
- (63) OCA
- (64) Proteopedia
- (65) MOPED
- (66) neXtProt
- (67) Reactome
- (68) GeneGo (Thomson Reuters)
- (69) DISEASES
- (70) SIMAP
- (71) GenomeRNAi
- (72) LifeMap
- (73) miRTarBase
- (74) MalaCards
- (75) Invitrogen
- (76) BitterDB
- (77) ESI-BIO
- (78) RefSeq
- (79) BioSystems
- (80) MaxQB
- (81) IUPHAR
- (82) BioGPS
- (83) Illumina
- (84) COMPARTMENTS
- (85) HOMER
- (86) PaxDb
- (87) ApexBio
- (88) Addgene
- (89) antibodies-online
- (90) CYP
- (91) NONCODE
- (92) TreeFam
- (93) PathCards
- (94) GeneReviews
- (95) GeneTex
- (96) Taconic Biosciences
- (97) GTEx
- (98) ProteomicsDB
- (99) SCBT
- (100) DGIdb
- (101) ClinicalTrials
- (102) RVIS
- (103) SIGNOR
- (104) diseasecard
- (105) NIH Rare Diseases
- (106) Orphanet
- (107) UMLS
- (108) GTR
- (109) Disease Ontology
- (110) MedlinePlus Genetics
- (111) MeSH
- (112) MedlinePlus
- (113) CDC
- (114) NINDS
- (115) NCBI Bookshelf
- (116) ClinVar
- (117) Gene Damage Index
- (118) HPO
- (119) UDN
- (120) VISTA
- (121) FANTOM5
- (122) ENCODE
- (123) ProSci
- (124) Horizon
- (125) The Signaling Pathways Project (SPP)
- (126) IID
- (127) VectorBuilder
- (128) SNPedia
- (129) BRCA Exchange
- (130) CIViC
- (131) ProteoGenix
- (132) dbSUPER
- (133) TISSUES
- (134) Gene ORGANizer
- (135) abm
- (136) Human Protein Atlas
- (137) GWAS Catalog
- (138) Monarch Initiative
- (139) DataMed
- (140) HumanCyc
- (141) UCNEbase
- (142) EPDnew
- (143) Applied Biosystems
- (144) GlyConnect
- (145) Aminode
- (146) GeneCopoeia
- (147) GPS-Prot
- (148) RNAcentral
- (149) LncRNADisease
- (150) LOVD
- (151) miR2Disease
- (152) DiseaseEnhancer
- (153) Boster Bio
- (154) Biorbyt
- (155) Biocompare
- (156) Mastermind
- (157) CTD^2 Dashboard
- (158) CraniofacialAtlas
- (159) GeneImprint
- (160) Synthego
- (161) ENA
- (162) GtRNAdb
- (163) LncBase
- (164) LncBook
- (165) LNCipedia
- (166) Modomics
- (167) PDBe
- (168) Rfam
- (169) SILVA
- (170) snOPY
- (171) SRPDB
- (172) GENCODE
- (173) TarBase
- (174) Open Targets Platform
- (175) 5SRRNADB
- (176) snoDB
- (177) MirGeneDB