Aliases for LINC01099 Gene

Data sources for LINC01099 Gene:

RNA type for LINC01099 Gene

lncRNA

Aliases for LINC01099 Gene

External Ids for LINC01099 Gene

Previous GeneCards Identifiers for LINC01099 Gene

  • GC04M178652

Summaries for LINC01099 Gene

GeneCards Summary for LINC01099 Gene

LINC01099 (Long Intergenic Non-Protein Coding RNA 1099) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for LINC01099 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LINC01099 Gene

Genomics for LINC01099 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for LINC01099 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH04J177906 Promoter 0.9 EPDnew Ensembl 250.7 +0.8 816 0.4 IKZF1 L3MBTL2 USF1 LINC01099 SNODB815 LINC01098 lnc-NEIL3-8 HSALNG0038758 AGA
GH04J177963 Enhancer 0.5 Ensembl 5.3 -55.8 -55773 1.3 JUND ATF4 EP300 CEBPB CEBPG LINC01099 HSALNG0038761 HSALNG0038759 LINC01098 HSALNG0038758 AGA
GH04J177855 Enhancer 0.3 Ensembl 0.2 +53.0 53016 1.2 NANOG SNODB815 LINC01099 LINC01098 lnc-NEIL3-8 AGA HSALNG0038758
GH04J177809 Enhancer 0.3 UCNEbase 0.2 +98.9 98852 0.3 SNODB815 LOC105377560 LINC01098 LINC01099 lnc-NEIL3-8 AGA HSALNG0038758
GH04J177797 Enhancer 0.2 Ensembl 0.1 +111.5 111516 0.2 SNODB815 LOC105377560 LINC01098 LINC01099 lnc-NEIL3-8 AGA HSALNG0038758
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LINC01099 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for LINC01099 Gene

Latest Assembly
chr4:177,729,637-177,908,817
(GRCh38/hg38)
Size:
179,181 bases
Orientation:
Minus strand

Previous Assembly
chr4:178,733,200-178,829,090
(GRCh37/hg19 by Entrez Gene)
Size:
95,891 bases
Orientation:
Minus strand

chr4:178,650,792-178,829,090
(GRCh37/hg19 by Ensembl)
Size:
178,299 bases
Orientation:
Minus strand

Genomic View for LINC01099 Gene

Genes around LINC01099 on UCSC Golden Path with GeneCards custom track
LINC01099 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Cytogenetic band:
LINC01099 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC01099 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINC01099 Gene

Proteins for LINC01099 Gene

Post-translational modifications for LINC01099 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC01099 Gene

Domains & Families for LINC01099 Gene

Gene Families for LINC01099 Gene

genes like me logo Genes that share domains with LINC01099: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LINC01099 Gene

Function for LINC01099 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC01099 Gene

Localization for LINC01099 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC01099 Gene

Pathways & Interactions for LINC01099 Gene

PathCards logo

SuperPathways for LINC01099 Gene

No Data Available

Gene Ontology (GO) - Biological Process for LINC01099 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for LINC01099 Gene

Drugs & Compounds for LINC01099 Gene

No Compound Related Data Available

Transcripts for LINC01099 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for LINC01099 Gene

RNAcentral Transcript ID RNA Type Length (nts) # of Sources Source Identifiers and Annotations
URS00004EAC05_9606 lncRNA 760 4

RefSeq: NR_108093,

Ensembl: ENST00000514736 (view in UCSC) ,

LNCipedia: LINC01099:1,

NONCODE: NONHSAT099394.2,

URS0000389FBF_9606 lncRNA 517 4

Ensembl: ENST00000507011 (view in UCSC) ,

LncBook: HSALNT0081387,

LNCipedia: LINC01099:4,

NONCODE: NONHSAT099391.2,

URS000075CB35_9606 lncRNA 1208 3

RefSeq: NR_108092,

LncBook: HSALNT0081389,

LNCipedia: LINC01099:2,

URS00000254DA_9606 lncRNA 580 3

Ensembl: ENST00000512527 (view in UCSC) ,

LNCipedia: LINC01099:3,

NONCODE: NONHSAT099392.2,

URS0001BE0070_9606 lncRNA 2860 1

LncBook: HSALNT0081390,

LINC01099 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for LINC01099 Gene

2 NCBI additional mRNA sequence :

Alternative Splicing Database (ASD) splice patterns (SP) for LINC01099 Gene

No ASD Table

Relevant External Links for LINC01099 Gene

GeneLoc Exon Structure for
LINC01099

Expression for LINC01099 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for LINC01099 Gene

mRNA differential expression in normal tissues according to GTEx for LINC01099 Gene

This gene is overexpressed in Artery - Aorta (x8.5), Brain - Amygdala (x6.2), Pancreas (x5.4), and Brain - Hippocampus (x4.0).
genes like me logo Genes that share expression patterns with LINC01099: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC01099 Gene

Orthologs for LINC01099 Gene

Evolution for LINC01099 Gene

ENSEMBL:
Gene Tree for LINC01099 (if available)
TreeFam:
Gene Tree for LINC01099 (if available)
Alliance of Genome Resources:
Additional Orthologs for LINC01099

No data available for Orthologs for LINC01099 Gene

Paralogs for LINC01099 Gene

No data available for Paralogs for LINC01099 Gene

Variants for LINC01099 Gene

dbSNP identifiers (rs#s) for variants without ClinVar clinical significance for LINC01099 Gene

All consequence types are included: molecular consequences (e.g. missense, synonymous), and location-based (e.g. intron, upstream).

Structural Variations from Database of Genomic Variants (DGV) for LINC01099 Gene

Variant ID Type Subtype PubMed ID
dgv5483n100 CNV loss 25217958
esv2728772 CNV deletion 23290073
esv3304652 CNV mobile element insertion 20981092
esv3342662 CNV insertion 20981092
esv3569841 CNV loss 25503493
esv3569843 CNV loss 25503493
esv3603311 CNV loss 21293372
esv3894077 CNV loss 25118596
esv3894079 CNV loss 25118596
nsv1023849 CNV loss 25217958
nsv1030366 CNV gain 25217958
nsv1032416 CNV gain 25217958
nsv1124901 CNV duplication 24896259
nsv596269 CNV gain 21841781

Additional Variant Information for LINC01099 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC01099
Leiden Open Variation Database (LOVD)
LINC01099

SNP Genotyping and Copy Number Assays for research

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP and Variation tolerance for LINC01099 Gene

Disorders for LINC01099 Gene

Additional Disease Information for LINC01099

No disorders were found for LINC01099 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LINC01099 Gene

Publications for LINC01099 Gene

No publications were found for LINC01099 Gene.

Products for LINC01099 Gene

Sources for LINC01099 Gene