Aliases for LINC01098 Gene

Data sources for LINC01098 Gene:

RNA type for LINC01098 Gene

lncRNA

Aliases for LINC01098 Gene

External Ids for LINC01098 Gene

Previous GeneCards Identifiers for LINC01098 Gene

  • GC04P178650

Summaries for LINC01098 Gene

GeneCards Summary for LINC01098 Gene

LINC01098 (Long Intergenic Non-Protein Coding RNA 1098) is an RNA Gene, and is affiliated with the lncRNA class. Diseases associated with LINC01098 include Immunoglobulin A Deficiency 1.

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LINC01098 Gene

Genomics for LINC01098 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for LINC01098 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH04J177727 Promoter/Enhancer 1.3 EPDnew Ensembl ENCODE 250.7 -0.3 -261 1 GABPB1 NFE2 JUND EHMT2 NFE2L2 ETV1 MAFG DIDO1 ATF2 ZNF518A LINC01098 HSALNG0038757 lnc-NEIL3-8 AGA
GH04J177906 Promoter 0.9 EPDnew Ensembl 0.1 +179.2 179248 0.4 IKZF1 L3MBTL2 USF1 LINC01099 SNODB815 LINC01098 lnc-NEIL3-8 HSALNG0038758 AGA
GH04J177809 Enhancer 0.3 UCNEbase 0.2 +81.2 81212 0.3 SNODB815 LOC105377560 LINC01098 LINC01099 lnc-NEIL3-8 AGA HSALNG0038758
GH04J177855 Enhancer 0.3 Ensembl 0.1 +127.0 127048 1.2 NANOG SNODB815 LINC01099 LINC01098 lnc-NEIL3-8 AGA HSALNG0038758
GH04J177797 Enhancer 0.2 Ensembl 0.2 +68.5 68548 0.2 SNODB815 LOC105377560 LINC01098 LINC01099 lnc-NEIL3-8 AGA HSALNG0038758
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LINC01098 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for LINC01098 Gene

Latest Assembly
chr4:177,728,753-178,028,971
(GRCh38/hg38)
Size:
300,219 bases
Orientation:
Plus strand

Previous Assembly
chr4:178,649,911-178,911,904
(GRCh37/hg19 by Entrez Gene)
Size:
261,994 bases
Orientation:
Plus strand

chr4:178,649,911-178,911,904
(GRCh37/hg19 by Ensembl)
Size:
261,994 bases
Orientation:
Plus strand

Genomic View for LINC01098 Gene

Genes around LINC01098 on UCSC Golden Path with GeneCards custom track
LINC01098 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Cytogenetic band:
LINC01098 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC01098 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINC01098 Gene

Proteins for LINC01098 Gene

Post-translational modifications for LINC01098 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC01098 Gene

Domains & Families for LINC01098 Gene

Gene Families for LINC01098 Gene

genes like me logo Genes that share domains with LINC01098: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LINC01098 Gene

Function for LINC01098 Gene

Phenotypes From GWAS Catalog for LINC01098 Gene

Phenotypes for LINC01098 Gene

genes like me logo Genes that share phenotypes with LINC01098: view

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC01098 Gene

Localization for LINC01098 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC01098 Gene

Pathways & Interactions for LINC01098 Gene

PathCards logo

SuperPathways for LINC01098 Gene

No Data Available

Gene Ontology (GO) - Biological Process for LINC01098 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for LINC01098 Gene

Drugs & Compounds for LINC01098 Gene

No Compound Related Data Available

Transcripts for LINC01098 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for LINC01098 Gene

RNAcentral Transcript ID RNA Type Length (nts) # of Sources Source Identifiers and Annotations
URS00007C493D_9606 lncRNA 1034 2

Ensembl: ENST00000507870 (view in UCSC) ,

LNCipedia: LINC01098:1,

URS000075A50F_9606 lncRNA 1034 1

RefSeq: NR_028342,

URS0000EF1C7A_9606 lncRNA 994 1

Ensembl: ENST00000666825 (view in UCSC) ,

URS0000EEDE14_9606 lncRNA 614 1

Ensembl: ENST00000667514 (view in UCSC) ,

URS00008BC616_9606 lncRNA 523 3

LncBook: HSALNT0081394,

LNCipedia: LINC01098:3,

NONCODE: NONHSAT099396.2,

LINC01098 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for LINC01098 Gene

1 REFSEQ mRNAs :
3 NCBI additional mRNA sequence :

Alternative Splicing Database (ASD) splice patterns (SP) for LINC01098 Gene

No ASD Table

Relevant External Links for LINC01098 Gene

GeneLoc Exon Structure for
LINC01098

Expression for LINC01098 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for LINC01098 Gene

mRNA differential expression in normal tissues according to GTEx for LINC01098 Gene

This gene is overexpressed in Testis (x32.0) and Brain - Spinal cord (cervical c-1) (x5.5).

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for LINC01098

genes like me logo Genes that share expression patterns with LINC01098: view

Primer products for research

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC01098 Gene

Orthologs for LINC01098 Gene

This gene was present in the common ancestor of human and chimp.

Orthologs for LINC01098 Gene

Organism Taxonomy Gene Similarity Type Details
Chimpanzee
(Pan troglodytes)
Mammalia LINC01098 30
  • 95 (a)
OneToOne
Species where no ortholog for LINC01098 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Eremothecium gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • Alpha proteobacteria (Wolbachia pipientis)
  • Amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • Baker's yeast (Saccharomyces cerevisiae)
  • Barley (Hordeum vulgare)
  • Beta proteobacteria (Neisseria meningitidis)
  • Bread mold (Neurospora crassa)
  • Chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • Common water flea (Daphnia pulex)
  • Corn (Zea mays)
  • Cow (Bos Taurus)
  • Dog (Canis familiaris)
  • E. coli (Escherichia coli)
  • Filamentous fungi (Aspergillus nidulans)
  • Firmicute Bacteria (Streptococcus pneumoniae)
  • Fission Yeast (Schizosaccharomyces pombe)
  • Fruit Fly (Drosophila melanogaster)
  • Green Algae (Chlamydomonas reinhardtii)
  • Honey Bee (Apis mellifera)
  • K. Lactis Yeast (Kluyveromyces lactis)
  • Lizard (Anolis carolinensis)
  • Loblloly Pine (Pinus taeda)
  • Malaria Parasite (Plasmodium falciparum)
  • Medicago Trunc (Medicago Truncatula)
  • Moss (Physcomitrella patens)
  • Mouse (Mus musculus)
  • Oppossum (Monodelphis domestica)
  • Orangutan (Pongo pygmaeus)
  • Pig (Sus scrofa)
  • Platypus (Ornithorhynchus anatinus)
  • Rainbow Trout (Oncorhynchus mykiss)
  • Rat (Rattus norvegicus)
  • Rice (Oryza sativa)
  • Rice Blast Fungus (Magnaporthe grisea)
  • Schistosome Parasite (Schistosoma mansoni)
  • Sea Anemone (Nematostella vectensis)
  • Sea Vase (Ciona intestinalis)
  • Sea Squirt (Ciona savignyi)
  • Sea Urchin (Strongylocentrotus purpuratus)
  • Sorghum (Sorghum bicolor)
  • Soybean (Glycine max)
  • Stem Rust Fungus (Puccinia graminis)
  • Sugarcane (Saccharum officinarum)
  • Thale Cress (Arabidopsis thaliana)
  • Tomato (Lycopersicon esculentum)
  • Toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • Tropical Clawed Frog (Silurana tropicalis)
  • Wheat (Triticum aestivum)
  • Worm (Caenorhabditis elegans)
  • Zebrafish (Danio rerio)

Evolution for LINC01098 Gene

ENSEMBL:
Gene Tree for LINC01098 (if available)
TreeFam:
Gene Tree for LINC01098 (if available)
Alliance of Genome Resources:
Additional Orthologs for LINC01098

Paralogs for LINC01098 Gene

No data available for Paralogs for LINC01098 Gene

Variants for LINC01098 Gene

dbSNP identifiers (rs#s) for variants without ClinVar clinical significance for LINC01098 Gene

All consequence types are included: molecular consequences (e.g. missense, synonymous), and location-based (e.g. intron, upstream).

Structural Variations from Database of Genomic Variants (DGV) for LINC01098 Gene

Variant ID Type Subtype PubMed ID
dgv106n17 CNV loss 16327808
dgv2955n106 CNV tandem duplication 24896259
dgv5483n100 CNV loss 25217958
esv1003270 CNV insertion 20482838
esv1057137 CNV insertion 17803354
esv1916588 CNV deletion 18987734
esv22047 CNV loss 19812545
esv2261042 CNV deletion 18987734
esv2421879 CNV deletion 20811451
esv2597701 CNV deletion 19546169
esv2641794 CNV deletion 19546169
esv2674573 CNV deletion 23128226
esv2675447 CNV deletion 23128226
esv2728772 CNV deletion 23290073
esv2728791 CNV deletion 23290073
esv2728792 CNV deletion 23290073
esv2760842 CNV loss 21179565
esv2763414 CNV loss 21179565
esv2763833 CNV loss 21179565
esv3304652 CNV mobile element insertion 20981092
esv3342662 CNV insertion 20981092
esv3381878 CNV insertion 20981092
esv3565066 CNV deletion 23714750
esv3569841 CNV loss 25503493
esv3569843 CNV loss 25503493
esv3603311 CNV loss 21293372
esv3603314 CNV loss 21293372
esv3603317 CNV loss 21293372
esv3603318 CNV gain 21293372
esv3603319 CNV loss 21293372
esv3894077 CNV loss 25118596
esv3894079 CNV loss 25118596
esv8656 CNV gain 19470904
nsv1023849 CNV loss 25217958
nsv1030366 CNV gain 25217958
nsv1032416 CNV gain 25217958
nsv1074775 CNV deletion 25765185
nsv1124901 CNV duplication 24896259
nsv1125245 CNV insertion 24896259
nsv1131845 CNV deletion 24896259
nsv1136927 CNV deletion 24896259
nsv289663 CNV deletion 16902084
nsv289913 CNV insertion 16902084
nsv292726 CNV deletion 16902084
nsv293654 CNV insertion 16902084
nsv442932 CNV loss 18776908
nsv514281 CNV loss 21397061
nsv523069 CNV loss 19592680
nsv596269 CNV gain 21841781
nsv596270 CNV loss 21841781
nsv818301 CNV loss 17921354

Variation tolerance for LINC01098 Gene

Gene Damage Index Score: 1.11; 22.49% of all genes are more intolerant (likely to be disease-causing)

Additional Variant Information for LINC01098 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC01098
Leiden Open Variation Database (LOVD)
LINC01098

SNP Genotyping and Copy Number Assays for research

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP for LINC01098 Gene

Disorders for LINC01098 Gene

MalaCards: The human disease database

(1) MalaCards diseases for LINC01098 Gene - From: COP

Disorder Aliases PubMed IDs
immunoglobulin a deficiency 1
  • igad1
- elite association - COSMIC cancer census association via MalaCards

Additional Disease Information for LINC01098

genes like me logo Genes that share disorders with LINC01098: view

No data available for UniProtKB/Swiss-Prot and Genatlas for LINC01098 Gene

Publications for LINC01098 Gene

  1. Personalized smoking cessation: interactions between nicotine dose, dependence and quit-success genotype score. (PMID: 20379614) Rose JE … Uhl GR (Molecular medicine (Cambridge, Mass.) 2010) 3
  2. Variation at the NFATC2 locus increases the risk of thiazolidinedione-induced edema in the Diabetes REduction Assessment with ramipril and rosiglitazone Medication (DREAM) study. (PMID: 20628086) Bailey SD … DREAM investigators (Diabetes care 2010) 3
  3. Gene-centric association signals for lipids and apolipoproteins identified via the HumanCVD BeadChip. (PMID: 19913121) Talmud PJ … BRIGHT Consortium (American journal of human genetics 2009) 3
  4. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3
  5. Toward a complete human genome sequence. (PMID: 9847074) Sanger Center … Genome Sequencing Center (Genome research 1998) 3

Products for LINC01098 Gene

Sources for LINC01098 Gene