LINC01089 Gene (RNA Gene)

Long Intergenic Non-Protein Coding RNA 1089

GC12M121796
GIFtS:
15
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Aliases for LINC01089 Gene

Data sources for LINC01089 Gene:

Subcategory (RNA class) for LINC01089 Gene

lncRNA

Aliases for LINC01089 Gene

External Ids for LINC01089 Gene

Previous GeneCards Identifiers for LINC01089 Gene

  • GC12M122236

Summaries for LINC01089 Gene

GeneCards Summary for LINC01089 Gene

LINC01089 (Long Intergenic Non-Protein Coding RNA 1089) is an RNA Gene, and is affiliated with the lncRNA class. Diseases associated with LINC01089 include Gemistocytic Astrocytoma and Breast Cancer.

Additional gene information for LINC01089 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LINC01089 Gene

Genomics for LINC01089 Gene

GeneHancer (GH) Regulatory Elements Pubs

Download GeneHancer 2017 data
Promoters and enhancers for LINC01089 Gene
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LINC01089 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for LINC01089 Gene

Latest Assembly
chr12:121,779,607-121,803,906
(GRCh38/hg38)
Size:
24,300 bases
Orientation:
Minus strand

Previous Assembly
chr12:122,233,173-122,240,852
(GRCh37/hg19 by Entrez Gene)
Size:
7,680 bases
Orientation:
Minus strand

chr12:122,233,173-122,241,812
(GRCh37/hg19 by Ensembl)
Size:
8,640 bases
Orientation:
Minus strand

Genomic View for LINC01089 Gene

Genes around LINC01089 on UCSC Golden Path with GeneCards custom track
LINC01089 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Cytogenetic band:
LINC01089 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC01089 Gene
GeneLoc Logo Genomic Neighborhood • Exon Structure • Gene Density

RefSeq DNA sequence for LINC01089 Gene

Proteins for LINC01089 Gene

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  1. Antibodies for research
  2. Protein products for research
  3. Assay products for research

Post-translational modifications for LINC01089 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC01089 Gene

Domains & Families for LINC01089 Gene

Gene Families for LINC01089 Gene

HGNC:
genes like me logo Genes that share domains with LINC01089: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LINC01089 Gene

Function for LINC01089 Gene

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  2. CRISPR products for research
  3. miRNA products for research
  4. Inhibitory RNAs for research
  5. Clone products for research
  6. Cell Lines for research

Phenotypes From GWAS Catalog for LINC01089 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC01089 Gene

Localization for LINC01089 Gene

Subcellular locations from

COMPARTMENTS
Extracellular space Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi Apparatus Nucleus Mitochondrion 0 1 2 3 4 5 Confidence
COMPARTMENTS Subcellular localization image for LINC01089 gene
Compartment Confidence
plasma membrane 1
extracellular 1
nucleus 1
endoplasmic reticulum 1

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC01089 Gene

Pathways & Interactions for LINC01089 Gene

PathCards logo

SuperPathways for LINC01089 Gene

No Data Available

Gene Ontology (GO) - Biological Process for LINC01089 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for LINC01089 Gene

Drugs & Compounds for LINC01089 Gene

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No Compound Related Data Available

Transcripts for LINC01089 Gene

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Non-coding RNA (ncRNA) Transcripts from RNAcentral for LINC01089 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS000050987C_9606 lncRNA 1528 3

Ensembl: ENST00000429892 (view in UCSC) ,

LncBook: HSALNT0196121,

LNCipedia: LINC01089:5,

URS00001A4715_9606 lncRNA 1285 3

Ensembl: ENST00000543334 (view in UCSC) ,

LncBook: HSALNT0196145,

LNCipedia: LINC01089:19,

URS0000261773_9606 lncRNA 1224 3

Ensembl: ENST00000542933 (view in UCSC) ,

LncBook: HSALNT0196122,

LNCipedia: LINC01089:17,

URS00003DAC3F_9606 lncRNA 1059 3

Ensembl: ENST00000543167 (view in UCSC) ,

LncBook: HSALNT0196140,

LNCipedia: LINC01089:20,

URS000019625F_9606 lncRNA 1024 3

Ensembl: ENST00000428029 (view in UCSC) ,

LncBook: HSALNT0196136,

LNCipedia: LINC01089:14,

LINC01089 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for LINC01089 Gene

9 NCBI additional mRNA sequence :

Alternative Splicing Database (ASD) splice patterns (SP) for LINC01089 Gene

No ASD Table

Relevant External Links for LINC01089 Gene

GeneLoc Exon Structure for
LINC01089

Expression for LINC01089 Gene

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mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for LINC01089 Gene

mRNA expression in normal human tissues for LINC01089 Gene
mRNA expression by GTEx for LINC01089 Gene

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for LINC01089

genes like me logo Genes that share expression patterns with LINC01089: view

Primer products for research

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC01089 Gene

Orthologs for LINC01089 Gene

Evolution for LINC01089 Gene

ENSEMBL:
Gene Tree for LINC01089 (if available)
TreeFam:
Gene Tree for LINC01089 (if available)

No data available for Orthologs for LINC01089 Gene

Paralogs for LINC01089 Gene

No data available for Paralogs for LINC01089 Gene

Variants for LINC01089 Gene

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  1. SNP Genotyping and Copy Number Assays for research

dbSNP identifiers (rs#s) for variants without ClinVar clinical significance for LINC01089 Gene

All consequence types are included: molecular consequences (e.g. missense, synonymous), and location-based (e.g. intron, upstream).

Structural Variations from Database of Genomic Variants (DGV) for LINC01089 Gene

Variant ID Type Subtype PubMed ID
esv33181 CNV loss 17666407
esv3892268 CNV loss 25118596
nsv1126324 CNV deletion 24896259
nsv1160065 CNV deletion 26073780
nsv911 CNV deletion 18451855

Additional Variant Information for LINC01089 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC01089

SNP Genotyping and Copy Number Assays for research

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP and Variation tolerance for LINC01089 Gene

Disorders for LINC01089 Gene

MalaCards: The human disease database

(2) MalaCards diseases for LINC01089 Gene - From: LNC and COP

Disorder Aliases PubMed IDs
gemistocytic astrocytoma
  • gemistocytic astrocytic tumor
breast cancer
  • breast cancer, familial
- elite association - COSMIC cancer census association via MalaCards

Additional Disease Information for LINC01089

Atlas
ATLAS of Genetics and Cytogenetics in Oncology and Haematology
Open Targets Platform
Open Targets Platform
genes like me logo Genes that share disorders with LINC01089: view

No data available for UniProtKB/Swiss-Prot and Genatlas for LINC01089 Gene

Publications for LINC01089 Gene

  1. LIMT is a novel metastasis inhibiting lncRNA suppressed by EGF and downregulated in aggressive breast cancer. (PMID: 27485121) Sas-Chen A … Yarden Y (EMBO molecular medicine 2016) 2 3 74
  2. The Use of Three Long Non-Coding RNAs as Potential Prognostic Indicators of Astrocytoma. (PMID: 26252651) Zhi F … Yang Y (PloS one 2015) 2 3 74
  3. Long Non-Coding RNA 001089 is a Prognostic Marker and Inhibits Glioma Cells Proliferation and Invasion. (PMID: 30868865) Gu J … Bu X (Clinical laboratory 2019) 3
  4. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3
  5. Transcriptome characterization elucidates signaling networks that control human ES cell growth and differentiation. (PMID: 15146197) Brandenberger R … Stanton LW (Nature biotechnology 2004) 3

ExternalLinks

View latest publications for LINC01089 gene in Mastermind

Products for LINC01089 Gene

Sources for LINC01089 Gene