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Aliases for LINC01089 Gene
Subcategory (RNA class) for LINC01089 Gene
lncRNA
Number of RNA Genes sources:
2 / 17
Aliases for LINC01089 Gene
External Ids for LINC01089 Gene
- HGNC: 27886
- Entrez Gene: 338799
- Ensembl: ENSG00000212694
Previous GeneCards Identifiers for LINC01089 Gene
- GC12M122236
Summaries for LINC01089 Gene
GeneCards Summary for LINC01089 Gene
LINC01089 (Long Intergenic Non-Protein Coding RNA 1089) is an RNA Gene, and is affiliated with the lncRNA class. Diseases associated with LINC01089 include Gemistocytic Astrocytoma and Astrocytoma.
Additional gene information for LINC01089 Gene
No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LINC01089 Gene
Genomics for LINC01089 Gene
GeneHancer (GH) Regulatory Elements Pubs
Promoters and enhancers for LINC01089 Gene
- Elite GeneHancer and/or Elite GeneHancer-gene association
Download GeneHancer data from 2017 publication |
Request up-to-date GeneHancer data (full dataset)
GeneHancers around LINC01089 on the GeneHancer Hub at the UCSC Golden Path
Genomic Locations for LINC01089 Gene
Genomic Locations for LINC01089 Gene
- chr12:121,779,608-121,803,906
- (GRCh38/hg38)
- Size:
- 24,299 bases
- Orientation:
- Minus strand
- chr12:122,233,173-122,241,812
- (GRCh37/hg19)
- Size:
- 8,640 bases
- Orientation:
- Minus strand
Genomic View for LINC01089 Gene
Genes around LINC01089 on UCSC Golden Path with GeneCards custom track
LINC01089 in the GeneCards ncRNA compendium hub on the UCSC Golden Path
- Cytogenetic band:
-
- 12q24.31 by HGNC
- 12q24.31 by Entrez Gene
- 12q24.31 by Ensembl
LINC01089 Gene in genomic location: bands according to
Ensembl, locations according to GeneLoc
(and/or Entrez Gene and/or Ensembl if different)
Genomic Neighborhood
• Exon Structure
• Gene Density
RefSeq DNA sequence for LINC01089 Gene
Proteins for LINC01089 Gene
Post-translational modifications for LINC01089 Gene
No Post-translational modifications
Antibody Products
Protein Products
- Search Origene for Purified Proteins, MassSpec and Protein Over-expression Lysates for LINC01089
- Origene Custom Protein Services for LINC01089
No data available for DME Specific Peptides for LINC01089 Gene
Domains & Families for LINC01089 Gene
Gene Families for LINC01089 Gene
No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LINC01089 Gene
Function for LINC01089 Gene
Phenotypes From GWAS Catalog for LINC01089 Gene
Animal Model Products
- Taconic Biosciences: Generate A Custom CRISPR Mouse Model For Your Study
CRISPR Products
- Browse CRISPR knockouts for LINC01089
miRNA Products
Inhibitory RNA Products
- Origene shrna and RNAi products in human, mouse, rat for LINC01089
- Browse OriGene Inhibitory RNA Products For LINC01089
Clone Products
No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC01089 Gene
Localization for LINC01089 Gene
| Compartment | Confidence |
|---|---|
| plasma membrane | 1 |
| extracellular | 1 |
| cytoskeleton | 1 |
| mitochondrion | 1 |
| nucleus | 1 |
| endoplasmic reticulum | 1 |
| cytosol | 1 |
No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC01089 Gene
Transcripts for LINC01089 Gene
Non-coding RNA (ncRNA) Transcripts from RNAcentral for LINC01089 Gene
| RNAcentral Transcript ID | Subcategory | Length (nts) | # of Sources | Source Identifiers and Annotations |
|---|---|---|---|---|
| URS000050987C_9606 | lncRNA | 1521 | 3 |
Ensembl: ENST00000429892 (view in UCSC) , LncBook: HSALNT0196121, LNCipedia: LINC01089:5, |
| URS00001A4715_9606 | lncRNA | 1282 | 3 |
Ensembl: ENST00000543334 (view in UCSC) , LncBook: HSALNT0196145, LNCipedia: LINC01089:19, |
| URS0000261773_9606 | lncRNA | 1220 | 3 |
Ensembl: ENST00000542933 (view in UCSC) , LncBook: HSALNT0196122, LNCipedia: LINC01089:17, |
| URS00003DAC3F_9606 | lncRNA | 1059 | 3 |
Ensembl: ENST00000543167 (view in UCSC) , LncBook: HSALNT0196140, LNCipedia: LINC01089:20, |
| URS000019625F_9606 | lncRNA | 1024 | 3 |
Ensembl: ENST00000428029 (view in UCSC) , LncBook: HSALNT0196136, LNCipedia: LINC01089:14, |
LINC01089 in the GeneCards ncRNA compendium hub on the UCSC Golden Path
Additional transcripts not in RNAcentral for LINC01089 Gene
- 9 NCBI additional mRNA sequence :
CRISPR Products
- Browse CRISPR knockouts for LINC01089
miRNA Products
Inhibitory RNA Products
- Origene shrna and RNAi products in human, mouse, rat for LINC01089
- Browse OriGene Inhibitory RNA Products For LINC01089
Clone Products
Relevant External Links for LINC01089 Gene
- GeneLoc Exon Structure for
- LINC01089
Expression for LINC01089 Gene
Transcriptomic regulation report from SPP (The Signaling Pathways Project) for LINC01089
Primer Products
-
OriGene qPCR primer pairs for LINC01089
Gene Expression Assay Products
No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC01089 Gene
Orthologs for LINC01089 Gene
No data available for Orthologs for LINC01089 Gene
Paralogs for LINC01089 Gene
No data available for Paralogs for LINC01089 Gene
Variants for LINC01089 Gene
| Variant ID | Type | Subtype | PubMed ID |
|---|---|---|---|
| esv33181 | CNV | loss | 17666407 |
| esv3892268 | CNV | loss | 25118596 |
| nsv1126324 | CNV | deletion | 24896259 |
| nsv1160065 | CNV | deletion | 26073780 |
| nsv911 | CNV | deletion | 18451855 |
Additional Variant Information for LINC01089 Gene
- SNPedia medical, phenotypic, and genealogical associations of SNPs for
- LINC01089
SNP Genotyping and Copy Number Assay Products
No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP and Variation tolerance for LINC01089 Gene
Disorders for LINC01089 Gene
| Disorder | Aliases | PubMed IDs |
|---|---|---|
| gemistocytic astrocytoma |
|
|
| astrocytoma |
|
|
| breast cancer |
|
|
| desmoid disease, hereditary |
|
|
Search LINC01089 in MalaCards
View complete list of genes associated with diseases
Additional Disease Information for LINC01089
No data available for UniProtKB/Swiss-Prot and Genatlas for LINC01089 Gene
Publications for LINC01089 Gene
- LIMT is a novel metastasis inhibiting lncRNA suppressed by EGF and downregulated in aggressive breast cancer. (PMID: 27485121) Sas-Chen A … Yarden Y (EMBO molecular medicine 2016) 2 3
- The Use of Three Long Non-Coding RNAs as Potential Prognostic Indicators of Astrocytoma. (PMID: 26252651) Zhi F … Yang Y (PloS one 2015) 2 3
- Long Non-Coding RNA 001089 is a Prognostic Marker and Inhibits Glioma Cells Proliferation and Invasion. (PMID: 30868865) Gu J … Bu X (Clinical laboratory 2019) 3
- Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3
- Transcriptome characterization elucidates signaling networks that control human ES cell growth and differentiation. (PMID: 15146197) Brandenberger R … Stanton LW (Nature biotechnology 2004) 3
Products for LINC01089 Gene
- Browse OriGene Antibodies
- Custom Antibody Services
- Browse OriGene ELISA Kits
- Custom Assay Services
- Search Origene for Purified Proteins, MassSpec and Protein Over-expression Lysates for LINC01089
- Origene Custom Protein Services for LINC01089
- Origene shrna and RNAi products in human, mouse, rat for LINC01089
- Browse OriGene Inhibitory RNA Products For LINC01089
- OriGene qPCR primer pairs for LINC01089
- Browse CRISPR knockouts for LINC01089
- Custom cloning services - gene synthesis, subcloning, mutagenesis, variant library, vector shuttling
- Browse OriGene miRNA Products For LINC01089
- Browse Sino Biological cDNA Clones
- Browse Sino Biological Recombinant Proteins
- Browse Sino Biological Cell Lysates
- Browse Sino Biological Antibodies
- Browse Sino Biological Assays
- Browse ELISA Kits
- Browse CRO Services
- High-throughput Antibody Production Service
- Protein Production Service
- Epitope Tag Antibodies & Reporter Protein Antibodies
- Lentiviral ORF Clones
- antibodies-online: Search results for available LOC338799 related products ranked by validation data
- antibodies-online: Search results for available LOC338799 related products ranked by validation data
- antibodies-online: Search results for available LOC338799 related products ranked by validation data
- Browse GeneCopoeia Cell Lines
- Search GeneCopoeia for knockout CRISPR/Cas9 clones, lentivirus, and/or AAV products for LINC01089
- Search GeneCopoeia for ORF cDNA, lentivirus, AAV viral particles, and/or promoter clone products for LINC01089
- Search GeneCopoeia for miRNA 3'UTR Target clone products for LINC01089
- Search GeneCopoeia for shRNA, lentivirus, and/or AAV clone products for LINC01089
Sources for LINC01089 Gene
- (1) GeneCards
- (2) HGNC
- (3) NCBI Entrez Gene
- (4) UniProtKB/Swiss-Prot
- (5) Ensembl
- (6) OMIM
- (7) GeneLoc
- (8) Gene Wiki
- (9) UCSC
- (10) PhosphoSitePlus
- (11) Cell Signaling Technology
- (12) GO
- (13) UniProtKB/TrEMBL
- (14) InterPro
- (15) ProtoNet
- (16) Blocks
- (17) MGI
- (18) IUBMB
- (19) KEGG
- (20) MINT
- (21) STRING
- (22) IntAct
- (23) Novoseek
- (24) PharmGKB
- (25) DrugBank
- (26) HMDB
- (27) ASD
- (28) SAGE
- (29) SOURCE
- (30) HomoloGene
- (31) PanEnsembl
- (32) euGenes
- (33) SGD
- (34) FlyBase
- (35) WormBase
- (36) Pseudogene
- (37) DGV
- (38) dbSNP
- (39) GenAtlas
- (40) HGMD
- (41) GAD
- (42) BGMUT
- (43) HuGE
- (44) Atlas
- (45) GenBank
- (46) HORDE
- (47) HUGE
- (48) IMGT
- (49) Leiden
- (50) miRBase
- (51) DME
- (52) OriGene
- (53) PubMed
- (54) R&D Systems
- (55) TGDB
- (56) Tocris
- (57) Abcam
- (58) Novus Biologicals
- (59) ProSpec
- (60) Sino Biological
- (61) GenScript
- (62) Qiagen
- (63) OCA
- (64) Proteopedia
- (65) MOPED
- (66) neXtProt
- (67) Reactome
- (68) GeneGo (Thomson Reuters)
- (69) DISEASES
- (70) SIMAP
- (71) GenomeRNAi
- (72) LifeMap
- (73) miRTarBase
- (74) MalaCards
- (75) Invitrogen
- (76) BitterDB
- (77) ESI-BIO
- (78) RefSeq
- (79) BioSystems
- (80) MaxQB
- (81) IUPHAR
- (82) BioGPS
- (83) Illumina
- (84) COMPARTMENTS
- (85) HOMER
- (86) PaxDb
- (87) ApexBio
- (88) Addgene
- (89) antibodies-online
- (90) CYP
- (91) NONCODE
- (92) TreeFam
- (93) PathCards
- (94) GeneReviews
- (95) GeneTex
- (96) Taconic Biosciences
- (97) GTEx
- (98) ProteomicsDB
- (99) SCBT
- (100) DGIdb
- (101) ClinicalTrials
- (102) RVIS
- (103) SIGNOR
- (104) diseasecard
- (105) NIH Rare Diseases
- (106) Orphanet
- (107) UMLS
- (108) GTR
- (109) Disease Ontology
- (110) Genetics Home Reference
- (111) MeSH
- (112) MedlinePlus
- (113) CDC
- (114) NINDS
- (115) NCBI Bookshelf
- (116) ClinVar
- (117) Gene Damage Index
- (118) HPO
- (119) UDN
- (120) VISTA
- (121) FANTOM5
- (122) ENCODE
- (123) ProSci
- (124) Horizon
- (125) The Signaling Pathways Project (SPP)
- (126) IID
- (127) VectorBuilder
- (128) SNPedia
- (129) BRCA Exchange
- (130) CIViC
- (131) ProteoGenix
- (132) dbSUPER
- (133) TISSUES
- (134) Gene ORGANizer
- (135) abm
- (136) Human Protein Atlas
- (137) GWAS Catalog
- (138) Monarch Initiative
- (139) DataMed
- (140) HumanCyc
- (141) UCNEbase
- (142) EPDnew
- (143) Applied Biosystems
- (144) GlyConnect
- (145) Aminode
- (146) GeneCopoeia
- (147) GPS-Prot
- (148) RNACentral
- (149) LncRNADisease
- (150) LOVD
- (151) miR2Disease
- (152) DiseaseEnhancer
- (153) Boster Bio
- (154) Biorbyt
- (155) Biocompare
- (156) Mastermind
- (157) CTD^2 Dashboard
- (158) CraniofacialAtlas
- (159) GeneImprint
- (160) Synthego
- (161) ENA
- (162) GtRNAdb
- (163) LncBase
- (164) LncBook
- (165) LNCipedia
- (166) Modomics
- (167) PDBe
- (168) Rfam
- (169) SILVA
- (170) snOPY
- (171) SRPDB
- (172) GENCODE
- (173) TarBase
- (174) Signalway Antibody
- (175) Open Targets Platform
- (176) 5SRRNADB
- (177) snoDB
- (178) MirGeneDB