Aliases for LINC01089 Gene

Subcategory (RNA class) for LINC01089 Gene

lncRNA

Number of RNA Genes sources:

2 / 14

Aliases for LINC01089 Gene

  • Long Intergenic Non-Protein Coding RNA 1089 2 3 5
  • Long Non Coding RNA Inhibiting Metastasis 2 3
  • LINC01089 2 168
  • HSALNG0094605 167
  • LIMT 3

External Ids for LINC01089 Gene

Previous GeneCards Identifiers for LINC01089 Gene

  • GC12M122236

Summaries for LINC01089 Gene

GeneCards Summary for LINC01089 Gene

LINC01089 (Long Intergenic Non-Protein Coding RNA 1089) is an RNA Gene, and is affiliated with the lncRNA class. Diseases associated with LINC01089 include Gemistocytic Astrocytoma and Astrocytoma.

Additional gene information for LINC01089 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LINC01089 Gene

Genomics for LINC01089 Gene

GeneHancer (GH) Regulatory Elements for LINC01089 Gene

Promoters and enhancers for LINC01089 Gene
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LINC01089 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LINC01089 Gene

Genomic Locations for LINC01089 Gene
chr12:121,779,608-121,803,906
(GRCh38/hg38)
Size:
24,299 bases
Orientation:
Minus strand
chr12:122,233,173-122,241,812
(GRCh37/hg19)
Size:
8,640 bases
Orientation:
Minus strand

Genomic View for LINC01089 Gene

Genes around LINC01089 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LINC01089 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC01089 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINC01089 Gene

Proteins for LINC01089 Gene

Post-translational modifications for LINC01089 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC01089 Gene

Domains & Families for LINC01089 Gene

Gene Families for LINC01089 Gene

genes like me logo Genes that share domains with LINC01089: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LINC01089 Gene

Function for LINC01089 Gene

Phenotypes From GWAS Catalog for LINC01089 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC01089 Gene

Localization for LINC01089 Gene

Subcellular locations from

COMPARTMENTS
Extracellular space Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi Apparatus Nucleus Mitochondrion 0 1 2 3 4 5 Confidence
COMPARTMENTS Subcellular localization image for LINC01089 gene
Compartment Confidence
plasma membrane 1
extracellular 1
cytoskeleton 1
endoplasmic reticulum 1

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC01089 Gene

Pathways & Interactions for LINC01089 Gene

PathCards logo

SuperPathways for LINC01089 Gene

No Data Available
;

Gene Ontology (GO) - Biological Process for LINC01089 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for LINC01089 Gene

Drugs & Compounds for LINC01089 Gene

No Compound Related Data Available

Transcripts for LINC01089 Gene

mRNA/cDNA for LINC01089 Gene

39 RNACentral transcripts :
7 REFSEQ mRNAs :
9 NCBI additional mRNA sequence :
12 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
24 LncBook transcripts :
32 LNCipedia transcripts :

Alternative Splicing Database (ASD) splice patterns (SP) for LINC01089 Gene

No ASD Table

Relevant External Links for LINC01089 Gene

GeneLoc Exon Structure for
LINC01089

Expression for LINC01089 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for LINC01089 Gene

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for LINC01089

genes like me logo Genes that share expression patterns with LINC01089: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC01089 Gene

Orthologs for LINC01089 Gene

Evolution for LINC01089 Gene

ENSEMBL:
Gene Tree for LINC01089 (if available)
TreeFam:
Gene Tree for LINC01089 (if available)

No data available for Orthologs for LINC01089 Gene

Paralogs for LINC01089 Gene

No data available for Paralogs for LINC01089 Gene

Variants for LINC01089 Gene

Additional dbSNP identifiers (rs#s) for LINC01089 Gene

Structural Variations from Database of Genomic Variants (DGV) for LINC01089 Gene

Variant ID Type Subtype PubMed ID
esv33181 CNV loss 17666407
esv3892268 CNV loss 25118596
nsv1126324 CNV deletion 24896259
nsv1160065 CNV deletion 26073780
nsv911 CNV deletion 18451855

Additional Variant Information for LINC01089 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC01089

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP and Variation tolerance for LINC01089 Gene

Disorders for LINC01089 Gene

MalaCards: The human disease database

(3) MalaCards diseases for LINC01089 Gene - From: LncRNADisease, DISEASES, and GeneCards

Disorder Aliases PubMed IDs
gemistocytic astrocytoma
  • gemistocytic astrocytic tumor
astrocytoma
  • astrocytic tumor
breast cancer
  • breast cancer, familial
- elite association - COSMIC cancer census association via MalaCards

Additional Disease Information for LINC01089

genes like me logo Genes that share disorders with LINC01089: view

No data available for UniProtKB/Swiss-Prot and Genatlas for LINC01089 Gene

Publications for LINC01089 Gene

  1. LIMT is a novel metastasis inhibiting lncRNA suppressed by EGF and downregulated in aggressive breast cancer. (PMID: 27485121) Sas-Chen A … Yarden Y (EMBO molecular medicine 2016) 2 3 54
  2. The Use of Three Long Non-Coding RNAs as Potential Prognostic Indicators of Astrocytoma. (PMID: 26252651) Zhi F … Yang Y (PloS one 2015) 2 3 54
  3. Long Non-Coding RNA 001089 is a Prognostic Marker and Inhibits Glioma Cells Proliferation and Invasion. (PMID: 30868865) Gu J … Bu X (Clinical laboratory 2019) 3 54
  4. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3 54
  5. Transcriptome characterization elucidates signaling networks that control human ES cell growth and differentiation. (PMID: 15146197) Brandenberger R … Stanton LW (Nature biotechnology 2004) 3 54

Products for LINC01089 Gene

Sources for LINC01089 Gene