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Aliases for LINC01089 Gene

Subcategory (RNA class) for LINC01089 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for LINC01089 Gene

  • Long Intergenic Non-Protein Coding RNA 1089 2 3 5
  • Long Non Coding RNA Inhibiting Metastasis 2 3
  • LIMT 3

External Ids for LINC01089 Gene

Previous GeneCards Identifiers for LINC01089 Gene

  • GC12M122236

Summaries for LINC01089 Gene

GeneCards Summary for LINC01089 Gene

LINC01089 (Long Intergenic Non-Protein Coding RNA 1089) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for LINC01089 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LINC01089 Gene

Genomics for LINC01089 Gene

GeneHancer (GH) Regulatory Elements for LINC01089 Gene

Promoters and enhancers for LINC01089 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH12I121783 Promoter/Enhancer 2.7 EPDnew FANTOM5 Ensembl ENCODE dbSUPER 29.6 +7.9 7914 24.5 CLOCK MLX FEZF1 DMAP1 IRF4 YY1 SLC30A9 ZNF213 E2F8 ZNF143 ENSG00000272849 SETD1B RHOF ZCCHC8 RSRC2 PSMD9 ANAPC5 KNTC1 LINC01089 HPD
GH12I122020 Promoter/Enhancer 2.5 EPDnew FANTOM5 Ensembl ENCODE dbSUPER 31.8 -219.1 -219149 4.5 FOXA2 MLX ARID4B SIN3A FEZF1 DMAP1 ZNF2 YY1 ZNF766 ZNF213 BCL7A LINC01089 WDR66 RSRC2 KNTC1 SETD1B PSMD9 VPS33A ZCCHC8 ENSG00000272849
GH12I122265 Promoter/Enhancer 2.1 EPDnew Ensembl ENCODE 22 -462.5 -462457 2.6 CLOCK MLX ZFP64 FEZF1 DMAP1 IRF4 YY1 SLC30A9 ZNF213 E2F8 ENSG00000256861 VPS33A RSRC2 C12orf65 ZCCHC8 ENSG00000235423 ANAPC5 ENSG00000272849 SETD1B LINC01089
GH12I121887 Promoter/Enhancer 2.1 EPDnew Ensembl ENCODE 21.6 -85.2 -85185 2.3 CLOCK MLX FEZF1 DMAP1 YY1 ZNF213 E2F8 ZNF143 SP3 MEF2D PSMD9 ENSG00000256950 HPD RSRC2 ZCCHC8 KNTC1 ENSG00000272849 LINC01089 SETD1B SPPL3
GH12I121810 Enhancer 1.4 Ensembl ENCODE dbSUPER 28.1 -8.5 -8477 3.6 HDGF PKNOX1 ZFP64 SIN3A ZNF2 ZNF213 ZNF143 SP3 NFYC REST ENSG00000272849 LINC01089 ZCCHC8 RSRC2 SETD1B ANAPC5 PSMD9 KNTC1 ENSG00000256811
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around LINC01089 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LINC01089 Gene

Genomic Locations for LINC01089 Gene
chr12:121,795,267-121,803,906
(GRCh38/hg38)
Size:
8,640 bases
Orientation:
Minus strand
chr12:122,233,173-122,241,812
(GRCh37/hg19)

Genomic View for LINC01089 Gene

Genes around LINC01089 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LINC01089 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC01089 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINC01089 Gene

Proteins for LINC01089 Gene

Post-translational modifications for LINC01089 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC01089 Gene

Domains & Families for LINC01089 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LINC01089 Gene

Function for LINC01089 Gene

Phenotypes From GWAS Catalog for LINC01089 Gene

Animal Model Products

Inhibitory RNA Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC01089 Gene

Localization for LINC01089 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC01089 Gene

Pathways & Interactions for LINC01089 Gene

SuperPathways for LINC01089 Gene

No Data Available

Interacting Proteins for LINC01089 Gene

Gene Ontology (GO) - Biological Process for LINC01089 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LINC01089 Gene

Drugs & Compounds for LINC01089 Gene

No Compound Related Data Available

Transcripts for LINC01089 Gene

Alternative Splicing Database (ASD) splice patterns (SP) for LINC01089 Gene

No ASD Table

Relevant External Links for LINC01089 Gene

GeneLoc Exon Structure for
LINC01089
ECgene alternative splicing isoforms for
LINC01089

Expression for LINC01089 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for LINC01089 Gene

NURSA nuclear receptor signaling pathways regulating expression of LINC01089 Gene:

LINC01089
genes like me logo Genes that share expression patterns with LINC01089: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC01089 Gene

Orthologs for LINC01089 Gene

Evolution for LINC01089 Gene

ENSEMBL:
Gene Tree for LINC01089 (if available)
TreeFam:
Gene Tree for LINC01089 (if available)

No data available for Orthologs for LINC01089 Gene

Paralogs for LINC01089 Gene

No data available for Paralogs for LINC01089 Gene

Variants for LINC01089 Gene

Sequence variations from dbSNP and Humsavar for LINC01089 Gene

SNP ID Clin Chr 12 pos Variation AA Info Type
rs1000022042 -- 121,803,127(-) C/T non_coding_transcript_variant
rs1000033021 -- 121,797,487(-) G/A intron_variant
rs1000136481 -- 121,802,911(-) T/C non_coding_transcript_variant
rs1000148507 -- 121,795,445(-) G/A non_coding_transcript_variant
rs1001015616 -- 121,800,981(-) C/T intron_variant

Structural Variations from Database of Genomic Variants (DGV) for LINC01089 Gene

Variant ID Type Subtype PubMed ID
nsv911 CNV deletion 18451855
nsv1160065 CNV deletion 26073780
nsv1126324 CNV deletion 24896259
esv3892268 CNV loss 25118596
esv33181 CNV loss 17666407

Additional Variant Information for LINC01089 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC01089

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for LINC01089 Gene

Disorders for LINC01089 Gene

Additional Disease Information for LINC01089

No disorders were found for LINC01089 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LINC01089 Gene

Publications for LINC01089 Gene

  1. LIMT is a novel metastasis inhibiting lncRNA suppressed by EGF and downregulated in aggressive breast cancer. (PMID: 27485121) Sas-Chen A … Yarden Y (EMBO molecular medicine 2016) 2 3 58
  2. The Use of Three Long Non-Coding RNAs as Potential Prognostic Indicators of Astrocytoma. (PMID: 26252651) Zhi F … Yang Y (PloS one 2015) 2 3 58
  3. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3 58
  4. Transcriptome characterization elucidates signaling networks that control human ES cell growth and differentiation. (PMID: 15146197) Brandenberger R … Stanton LW (Nature biotechnology 2004) 3 58
  5. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3 58

Products for LINC01089 Gene

Sources for LINC01089 Gene

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