Aliases for LINC01088 Gene

Subcategory (RNA class) for LINC01088 Gene

lncRNA

Number of RNA Genes sources:

3 / 17

Aliases for LINC01088 Gene

  • Long Intergenic Non-Protein Coding RNA 1088 2 3 5
  • LINC01088 2 5 165
  • NONHSAG038292.2 91
  • HSALNG0035423 164

External Ids for LINC01088 Gene

Previous GeneCards Identifiers for LINC01088 Gene

  • GC04P079894

Summaries for LINC01088 Gene

GeneCards Summary for LINC01088 Gene

LINC01088 (Long Intergenic Non-Protein Coding RNA 1088) is an RNA Gene, and is affiliated with the lncRNA class. Diseases associated with LINC01088 include Ovarian Cancer.

Additional gene information for LINC01088 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LINC01088 Gene

Genomics for LINC01088 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for LINC01088 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH04J078937 Promoter/Enhancer 2.2 EPDnew FANTOM5 Ensembl ENCODE CraniofacialAtlas 605.1 -0.5 -484 2.8 HNRNPL CREB1 PRDM10 POLR2A BACH1 JUND LARP7 ZNF143 ZIC2 RBFOX2 PAQR3 LINC01088 lnc-NAA11-1 MN298120 BMP2K
GH04J079209 Promoter/Enhancer 1.7 EPDnew FANTOM5 ENCODE dbSUPER 600.1 +271.6 271645 4.2 TFE3 LEF1 IKZF1 JUND PKNOX1 ZNF24 MTA1 NR2C1 ZNF740 KAT8 LINC01088 NAA11 piR-30876-087 piR-61514-127 PAQR3
GH04J078970 Promoter/Enhancer 0.8 EPDnew Ensembl ENCODE 617.3 +32.0 32007 1 SPI1 LINC01088 piR-61532-219 PAQR3 NAA11
GH04J079197 Promoter/Enhancer 0.8 EPDnew dbSUPER 600.1 +258.1 258065 0.1 POLR2A USF1 RAD51 USF2 LINC01088 piR-30876-087 piR-34009-018 NAA11 PAQR3
GH04J078621 Promoter/Enhancer 1.9 FANTOM5 Ensembl ENCODE dbSUPER 5.7 -312.9 -312859 10.7 ARHGAP35 ATF7 ZNF629 RFX1 LEF1 IKZF1 JUND FOXA1 DDX20 MTA2 CNOT6L BMP2K ENSG00000239793 LINC01094 LINC01088 piR-35371-009 ENSG00000200998 ANXA3
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LINC01088 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for LINC01088 Gene

Genomic Locations for LINC01088 Gene
chr4:78,939,485-79,527,816
(GRCh38/hg38)
Size:
588,332 bases
Orientation:
Plus strand
chr4:79,892,902-80,229,953
(GRCh37/hg19)
Size:
337,052 bases
Orientation:
Plus strand

Genomic View for LINC01088 Gene

Genes around LINC01088 on UCSC Golden Path with GeneCards custom track
LINC01088 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Cytogenetic band:
LINC01088 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC01088 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINC01088 Gene

Proteins for LINC01088 Gene

Post-translational modifications for LINC01088 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC01088 Gene

Domains & Families for LINC01088 Gene

Gene Families for LINC01088 Gene

genes like me logo Genes that share domains with LINC01088: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LINC01088 Gene

Function for LINC01088 Gene

Phenotypes From GWAS Catalog for LINC01088 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC01088 Gene

Localization for LINC01088 Gene

Subcellular locations from

COMPARTMENTS
Extracellular space Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi Apparatus Nucleus Mitochondrion 0 1 2 3 4 5 Confidence
COMPARTMENTS Subcellular localization image for LINC01088 gene
Compartment Confidence
cytoskeleton 1

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC01088 Gene

Pathways & Interactions for LINC01088 Gene

PathCards logo

SuperPathways for LINC01088 Gene

No Data Available

Gene Ontology (GO) - Biological Process for LINC01088 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for LINC01088 Gene

Drugs & Compounds for LINC01088 Gene

No Compound Related Data Available

Transcripts for LINC01088 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for LINC01088 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS000075B361_9606 lncRNA 1011 4

HGNC: 49148,

RefSeq: NR_038342,

LNCipedia: LINC01088:3,

NONCODE: NONHSAT097098.2,

URS00005A0266_9606 lncRNA 842 4

Ensembl: ENST00000507761 (view in UCSC) ,

LncBook: HSALNT0074143,

LNCipedia: LINC01088:9,

NONCODE: NONHSAT097104.2,

URS00005B27B7_9606 lncRNA 785 4

Ensembl: ENST00000507476 (view in UCSC) ,

LncBook: HSALNT0074145,

LNCipedia: LINC01088:10,

NONCODE: NONHSAT097105.2,

URS00000EDE50_9606 lncRNA 679 4

Ensembl: ENST00000511241 (view in UCSC) ,

LncBook: HSALNT0074159,

LNCipedia: LINC01088:14,

NONCODE: NONHSAT097109.2,

URS000008AA96_9606 lncRNA 664 4

Ensembl: ENST00000515597 (view in UCSC) ,

LncBook: HSALNT0074141,

LNCipedia: LINC01088:8,

NONCODE: NONHSAT097103.2,

LINC01088 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for LINC01088 Gene

2 NCBI additional mRNA sequence :

Alternative Splicing Database (ASD) splice patterns (SP) for LINC01088 Gene

No ASD Table

Relevant External Links for LINC01088 Gene

GeneLoc Exon Structure for
LINC01088

Expression for LINC01088 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for LINC01088 Gene

mRNA differential expression in normal tissues according to GTEx for LINC01088 Gene

This gene is overexpressed in Artery - Tibial (x7.8).

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for LINC01088

genes like me logo Genes that share expression patterns with LINC01088: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC01088 Gene

Orthologs for LINC01088 Gene

Evolution for LINC01088 Gene

ENSEMBL:
Gene Tree for LINC01088 (if available)
TreeFam:
Gene Tree for LINC01088 (if available)

No data available for Orthologs for LINC01088 Gene

Paralogs for LINC01088 Gene

No data available for Paralogs for LINC01088 Gene

Variants for LINC01088 Gene

Additional dbSNP identifiers (rs#s) for LINC01088 Gene

Structural Variations from Database of Genomic Variants (DGV) for LINC01088 Gene

Variant ID Type Subtype PubMed ID
dgv154n6 CNV deletion 16902084
dgv2832n106 CNV deletion 24896259
esv2096264 CNV deletion 18987734
esv2727859 CNV deletion 23290073
esv2727860 CNV deletion 23290073
esv3300495 CNV deletion 24192839
esv3564125 CNV deletion 23714750
esv3601112 CNV loss 21293372
esv7197 CNV loss 19470904
nsv1006026 CNV loss 25217958
nsv1010833 CNV gain 25217958
nsv1014428 CNV gain 25217958
nsv1073777 CNV deletion 25765185
nsv1112856 CNV deletion 24896259
nsv1151201 CNV deletion 26484159
nsv293195 CNV deletion 16902084
nsv478888 CNV novel sequence insertion 20440878
nsv523154 CNV loss 19592680
nsv829979 CNV gain 17160897
nsv955680 CNV deletion 24416366
nsv999174 CNV loss 25217958

Additional Variant Information for LINC01088 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC01088

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP and Variation tolerance for LINC01088 Gene

Disorders for LINC01088 Gene

MalaCards: The human disease database

(1) MalaCards diseases for LINC01088 Gene - From: LncRNADisease and DISEASES

Disorder Aliases PubMed IDs
ovarian cancer
  • ovarian cancer, somatic
- elite association - COSMIC cancer census association via MalaCards
genes like me logo Genes that share disorders with LINC01088: view

No data available for UniProtKB/Swiss-Prot and Genatlas for LINC01088 Gene

Publications for LINC01088 Gene

  1. linc01088 promotes cell proliferation by scaffolding EZH2 and repressing p21 in human non-small cell lung cancer. (PMID: 31811854) Liu JQ … Zhong MZ (Life sciences 2020) 3
  2. LINC01088 inhibits tumorigenesis of ovarian epithelial cells by targeting miR-24-1-5p. (PMID: 29440672) Zhang W … Zhou J (Scientific reports 2018) 3
  3. The down-regulation of long non-coding RNA LINC01088 is associated with the poor prognosis of epithelial ovarian cancer patients. (PMID: 30280763) Ai H … Xue XO (European review for medical and pharmacological sciences 2018) 3
  4. Generation and analysis of 280,000 human expressed sequence tags. (PMID: 8889549) Hillier LD … Marra M (Genome research 1996) 3

Products for LINC01088 Gene

Sources for LINC01088 Gene