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Aliases for LINC01087 Gene

Subcategory (RNA class) for LINC01087 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for LINC01087 Gene

  • Long Intergenic Non-Protein Coding RNA 1087 2 3 5

External Ids for LINC01087 Gene

Previous GeneCards Identifiers for LINC01087 Gene

  • GC02P132396

Summaries for LINC01087 Gene

GeneCards Summary for LINC01087 Gene

LINC01087 (Long Intergenic Non-Protein Coding RNA 1087) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for LINC01087 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LINC01087 Gene

Genomics for LINC01087 Gene

GeneHancer (GH) Regulatory Elements for LINC01087 Gene

Promoters and enhancers for LINC01087 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH02I131640 Enhancer 0.9 ENCODE 0.8 +4.6 4556 1.4 PKNOX1 ATF1 FOXA2 ARNT TCF12 ZNF766 ATF7 NCOA1 ZNF592 MEF2D C2orf27A LOC150776 LINC01087 PIR48396 GRAMD4P8
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around LINC01087 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LINC01087 Gene

Genomic Locations for LINC01087 Gene
chr2:131,637,025-131,649,615
(GRCh38/hg38)
Size:
12,591 bases
Orientation:
Plus strand
chr2:132,394,598-132,407,188
(GRCh37/hg19)

Genomic View for LINC01087 Gene

Genes around LINC01087 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LINC01087 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC01087 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINC01087 Gene

Proteins for LINC01087 Gene

Post-translational modifications for LINC01087 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC01087 Gene

Domains & Families for LINC01087 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LINC01087 Gene

Function for LINC01087 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC01087 Gene

Localization for LINC01087 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC01087 Gene

Pathways & Interactions for LINC01087 Gene

SuperPathways for LINC01087 Gene

No Data Available

Interacting Proteins for LINC01087 Gene

Gene Ontology (GO) - Biological Process for LINC01087 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LINC01087 Gene

Drugs & Compounds for LINC01087 Gene

No Compound Related Data Available

Transcripts for LINC01087 Gene

mRNA/cDNA for LINC01087 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for LINC01087 Gene

No ASD Table

Relevant External Links for LINC01087 Gene

GeneLoc Exon Structure for
LINC01087
ECgene alternative splicing isoforms for
LINC01087

Expression for LINC01087 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for LINC01087 Gene

mRNA differential expression in normal tissues according to GTEx for LINC01087 Gene

This gene is overexpressed in Testis (x32.8) and Breast - Mammary Tissue (x11.0).

NURSA nuclear receptor signaling pathways regulating expression of LINC01087 Gene:

LINC01087
genes like me logo Genes that share expression patterns with LINC01087: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC01087 Gene

Orthologs for LINC01087 Gene

Evolution for LINC01087 Gene

ENSEMBL:
Gene Tree for LINC01087 (if available)
TreeFam:
Gene Tree for LINC01087 (if available)

No data available for Orthologs for LINC01087 Gene

Paralogs for LINC01087 Gene

No data available for Paralogs for LINC01087 Gene

Variants for LINC01087 Gene

Sequence variations from dbSNP and Humsavar for LINC01087 Gene

SNP ID Clin Chr 02 pos Variation AA Info Type
rs1000086490 -- 131,636,328(+) A/C upstream_transcript_variant
rs1000761136 -- 131,638,654(+) A/T non_coding_transcript_variant
rs1000983540 -- 131,642,562(+) T/G intron_variant
rs1001261890 -- 131,646,764(+) G/A intron_variant
rs1001333485 -- 131,637,210(+) C/T non_coding_transcript_variant

Structural Variations from Database of Genomic Variants (DGV) for LINC01087 Gene

Variant ID Type Subtype PubMed ID
esv24587 CNV gain+loss 19812545
esv2677729 CNV deletion 23128226
esv2720788 CNV deletion 23290073
esv2759092 CNV gain+loss 17122850
esv2762850 CNV gain 21179565
esv3346779 CNV insertion 20981092
esv33695 CNV loss 17666407
esv34704 CNV gain 17911159
esv3592489 CNV gain 21293372
nsv1011967 CNV gain 25217958
nsv10186 CNV loss 18304495
nsv428404 CNV loss 18775914
nsv483103 CNV gain+loss 15286789
nsv820012 CNV loss 19587683
nsv821714 CNV loss 20364138
nsv834377 CNV gain 17160897
nsv953172 CNV duplication 24416366
nsv961654 CNV duplication 23825009
nsv961887 CNV duplication 23825009
nsv962010 CNV duplication 23825009
nsv997248 CNV loss 25217958
nsv999735 CNV gain 25217958

Additional Variant Information for LINC01087 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC01087

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for LINC01087 Gene

Disorders for LINC01087 Gene

Additional Disease Information for LINC01087

No disorders were found for LINC01087 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LINC01087 Gene

Publications for LINC01087 Gene

  1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3 58

Products for LINC01087 Gene

Sources for LINC01087 Gene

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