Aliases for LINC01087 Gene

Data sources for LINC01087 Gene:

RNA type for LINC01087 Gene

lncRNA

Aliases for LINC01087 Gene

External Ids for LINC01087 Gene

Previous GeneCards Identifiers for LINC01087 Gene

  • GC02P132396
  • GC02P131637
  • GC02P131839
  • GC02P132469
  • GC02P132755
  • GC02P133059

Summaries for LINC01087 Gene

GeneCards Summary for LINC01087 Gene

LINC01087 (Long Intergenic Non-Protein Coding RNA 1087) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for LINC01087 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LINC01087 Gene

Genomics for LINC01087 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for LINC01087 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH02J131629 Enhancer 0.2 Ensembl 250.7 -1.1 -1076 0.2 HSALNG0018909 LINC01087 NBEAP2 CCDC74A ANKRD30BL
GH02J131640 Enhancer 0.9 ENCODE 0.4 +10.6 10604 1.4 IKZF1 NCOR1 ZNF592 MNT ARNT TAF9B FOXA2 NBN TAL1 ELF1 NBEAP2 SMPD4BP piR-54397-003 C2orf27A LINC01087 CCDC74A ANKRD30BL
GH02J131667 Enhancer 1.1 FANTOM5 ENCODE 0.3 +38.3 38308 2.6 ZNF207 NCOR1 IKZF1 ZNF592 NFIC REST ZEB1 NR2C1 ZNF217 ARNT piR-52457-006 NBEAP2 CCDC74A piR-58716-004 C2orf27A LINC01087 ANKRD30BL
GH02J131672 Promoter/Enhancer 1.2 ENCODE CraniofacialAtlas 0.3 +41.7 41656 0.4 ZNF654 KLF9 NFIC ZIC2 REST TRIM22 ZNF341 ZFP64 CTCF ZNF217 AB372632-006 HSALNG0018915 piR-52457-006 FAM168B NBEAP2 C2orf27A LINC01087 CCDC74A ANKRD30BL
GH02J131673 Promoter 1 CraniofacialAtlas 0.3 +42.9 42851 0.4 ZNF654 TRIM22 ELF1 SMAD4 RAD21 RARA SMC3 GABPB1 TEAD3 ZSCAN9 AB372632-006 HSALNG0018915 HSALNG0018916 C2orf27A LINC01087 CCDC74A ANKRD30BL
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LINC01087 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for LINC01087 Gene

Latest Assembly
chr2:131,630,977-131,676,056
(GRCh38/hg38)
Size:
45,080 bases
Orientation:
Plus strand

Previous Assembly
chr2:132,394,598-132,407,188
(GRCh37/hg19 by Entrez Gene)
Size:
12,591 bases
Orientation:
Plus strand

chr2:132,394,598-132,407,188
(GRCh37/hg19 by Ensembl)
Size:
12,591 bases
Orientation:
Plus strand

Genomic View for LINC01087 Gene

Genes around LINC01087 on UCSC Golden Path with GeneCards custom track
LINC01087 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Cytogenetic band:
LINC01087 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC01087 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINC01087 Gene

Proteins for LINC01087 Gene

Post-translational modifications for LINC01087 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC01087 Gene

Domains & Families for LINC01087 Gene

Gene Families for LINC01087 Gene

genes like me logo Genes that share domains with LINC01087: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LINC01087 Gene

Function for LINC01087 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC01087 Gene

Localization for LINC01087 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC01087 Gene

Pathways & Interactions for LINC01087 Gene

PathCards logo

SuperPathways for LINC01087 Gene

No Data Available

Gene Ontology (GO) - Biological Process for LINC01087 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for LINC01087 Gene

Drugs & Compounds for LINC01087 Gene

No Compound Related Data Available

Transcripts for LINC01087 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for LINC01087 Gene

RNAcentral Transcript ID RNA Type Length (nts) # of Sources Source Identifiers and Annotations
URS00001A2CE1_9606 lncRNA 3516 5

RefSeq: NR_108087,

Ensembl: ENST00000431979 (view in UCSC) ,

LncBook: HSALNT0039948,

LNCipedia: LINC01087:1,

NONCODE: NONHSAT074491.2,

URS00008BF73C_9606 lncRNA 901 3

LncBook: HSALNT0039949,

LNCipedia: LINC01087:2,

NONCODE: NONHSAT074492.2,

URS00009C0F47_9606 lncRNA 3823 2

LncBook: HSALNT0039945,

NONCODE: NONHSAT182662.1,

URS00008B6DC6_9606 lncRNA 784 2

LncBook: HSALNT0207725,

NONCODE: NONHSAT035466.2,

URS0001BEEAAB_9606 lncRNA 3823 1

LncBook: HSALNT0039945,

LINC01087 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for LINC01087 Gene

1 NCBI additional mRNA sequence :

Alternative Splicing Database (ASD) splice patterns (SP) for LINC01087 Gene

No ASD Table

Relevant External Links for LINC01087 Gene

GeneLoc Exon Structure for
LINC01087

Expression for LINC01087 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for LINC01087 Gene

mRNA differential expression in normal tissues according to GTEx for LINC01087 Gene

This gene is overexpressed in Testis (x32.8) and Breast - Mammary Tissue (x11.0).

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for LINC01087

genes like me logo Genes that share expression patterns with LINC01087: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC01087 Gene

Orthologs for LINC01087 Gene

Evolution for LINC01087 Gene

ENSEMBL:
Gene Tree for LINC01087 (if available)
TreeFam:
Gene Tree for LINC01087 (if available)
Alliance of Genome Resources:
Additional Orthologs for LINC01087

No data available for Orthologs for LINC01087 Gene

Paralogs for LINC01087 Gene

No data available for Paralogs for LINC01087 Gene

Variants for LINC01087 Gene

dbSNP identifiers (rs#s) for variants without ClinVar clinical significance for LINC01087 Gene

All consequence types are included: molecular consequences (e.g. missense, synonymous), and location-based (e.g. intron, upstream).

Structural Variations from Database of Genomic Variants (DGV) for LINC01087 Gene

Variant ID Type Subtype PubMed ID
esv24587 CNV gain+loss 19812545
esv2677729 CNV deletion 23128226
esv2720788 CNV deletion 23290073
esv2759092 CNV gain+loss 17122850
esv2762850 CNV gain 21179565
esv3346779 CNV insertion 20981092
esv33695 CNV loss 17666407
esv34704 CNV gain 17911159
esv3592489 CNV gain 21293372
nsv1011967 CNV gain 25217958
nsv10186 CNV loss 18304495
nsv428404 CNV loss 18775914
nsv483103 CNV gain+loss 15286789
nsv820012 CNV loss 19587683
nsv821714 CNV loss 20364138
nsv834377 CNV gain 17160897
nsv953172 CNV duplication 24416366
nsv961654 CNV duplication 23825009
nsv961887 CNV duplication 23825009
nsv962010 CNV duplication 23825009
nsv997248 CNV loss 25217958
nsv999735 CNV gain 25217958

Additional Variant Information for LINC01087 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC01087
Leiden Open Variation Database (LOVD)
LINC01087

SNP Genotyping and Copy Number Assays for research

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP and Variation tolerance for LINC01087 Gene

Disorders for LINC01087 Gene

Additional Disease Information for LINC01087

No disorders were found for LINC01087 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LINC01087 Gene

Publications for LINC01087 Gene

  1. Unravelling the role of long non-coding RNA - LINC01087 in breast cancer. (PMID: 31989062) Tripathi R … Varadwaj PK (Non-coding RNA research 2020) 2 3
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3

Products for LINC01087 Gene

Sources for LINC01087 Gene